Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45560 82 / 1e-18 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 77 / 8e-17 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45550 76 / 2e-16 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G61040 72 / 2e-15 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33720 72 / 3e-15 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT1G33730 70 / 2e-14 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT5G07990 67 / 2e-13 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G13080 62 / 6e-12 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26290 62 / 9e-12 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT5G04330 62 / 1e-11 Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021620 [exp] 72 / 6e-15 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10038158 [exp] 71 / 1e-14 AT5G25140 353 / 2e-116 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) Lus10028857 [exp] 70 / 2e-14 AT2G45550 459 / 2e-158 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10042815 [exp] 70 / 2e-14 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10008938 [exp] 69 / 3e-14 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10021158 [exp] 69 / 3e-14 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10016601 [exp] 69 / 7e-14 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10006323 [exp] 68 / 1e-13 AT1G33720 371 / 1e-123 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Lus10016599 [exp] 67 / 3e-13 AT3G26330 395 / 7e-133 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G136600 [exp] 79 / 2e-17 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136800 [exp] 77 / 6e-17 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G109300 [exp] 72 / 3e-15 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.003G118200 [exp] 72 / 3e-15 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.013G073300 [exp] 71 / 1e-14 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.015G138900 [exp] 71 / 1e-14 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.001G113900 [exp] 66 / 6e-13 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.007G085000 [exp] 64 / 2e-12 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.009G123600 [exp] 63 / 5e-12 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G084700 [exp] 62 / 9e-12 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10014999 pacid=23152784 polypeptide=Lus10014999 locus=Lus10014999.g ID=Lus10014999.BGIv1.0 annot-version=v1.0 ATGGACGAAGAAGAACCACACGGTCGAGGAATCCGACCTCGTCGAGCTTCCTTACATTTGCTCGTGTGTGAAGGAGACCTTACGACTCCACCCGCCGGCC CCACTCCTGCTCCCTCGTCGAGCCGCAAAGGATTGCCACGTCATGAACGACAACTACACCATCCCGAAGGGATCGCAAGTGTTTGTCAACGTGTGCGCCA TTGCGAGGACCCGCGTTACTGGGAGGATCCCTCGCGGTTCAACCTGAGAGGTTTGGGTCAAGATCGTCTATCGAAGATGAAGTGGATTAGAAAGGTAACC ACTTCGAGGATCTGCTCTGGAATGTCGATGGCTATGAGGAAAATTGAGCTGGTTATGGCCACGTTGGTGTATGAGTTTGATTGGTCCTTGCTTATGGGAA TGATGGTTGAGGAGTTGGATATGGACGAAGGATACGGTGCCACGTTGATCAAATCAAACCCTCTCATCGCTATCCCAACCCTAAAGTCTTAA
AA sequence Show only first row Show all	>Lus10014999 pacid=23152784 polypeptide=Lus10014999 locus=Lus10014999.g ID=Lus10014999.BGIv1.0 annot-version=v1.0 MDEEEPHGRGIRPRRASLHLLVCEGDLTTPPAGPTPAPSSSRKGLPRHERQLHHPEGIASVCQRVRHCEDPRYWEDPSRFNLRGLGQDRLSKMKWIRKVT TSRICSGMSMAMRKIELVMATLVYEFDWSLLMGMMVEELDMDEGYGATLIKSNPLIAIPTLKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10014999 [exp]	0	1
AT5G46930			Plant invertase/pectin methyle...		Lus10030926 [exp]	1.0	0.7943
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	6.0	0.7820
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	7.3	0.7820
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	8.5	0.7820
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	9.7	0.7743
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	10.7	0.7717
					Lus10011218 [exp]	11.8	0.7681
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	13.4	0.7260
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	13.9	0.7264
AT1G62310			transcription factor jumonji (...		Lus10004603 [exp]	14.5	0.7073

Compare expression of checked genes

Lus10014999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.