Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00755 274 / 4e-89 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038879 [exp] 393 / 4e-137 AT4G00755 142 / 9e-40 F-box family protein (.1.2) Lus10036561 [exp] 311 / 6e-104 AT4G00755 323 / 5e-109 F-box family protein (.1.2) Lus10041367 [exp] 270 / 1e-87 AT4G00755 306 / 4e-102 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G153900 [exp] 318 / 1e-106 AT4G00755 311 / 3e-104 F-box family protein (.1.2) Potri.014G076300 [exp] 316 / 1e-105 AT4G00755 352 / 7e-120 F-box family protein (.1.2) Potri.014G076200 [exp] 94 / 5e-23 AT4G00755 95 / 6e-24 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015001 pacid=23152755 polypeptide=Lus10015001 locus=Lus10015001.g ID=Lus10015001.BGIv1.0 annot-version=v1.0 ATGGGTTTTGGATTGGGAATCGGGTTCGGGTTCGGGTTCAATCAGCAGACCGGTTCCGGGTTTCGGTCGGATTCGATGATGCAAGCAAGGGAGAAATGCG GCAGCGACTTTATGCAATGGCTGGGAGTCGACATGTCGATTCAGGTTCTGATGCATTTGGACGACCCGTCCGACCTGGTTCGAATCTGCGCAGTTTCGAG CTCGTGGCGACAATTCGTGATTGAGCATTGCATCTGCAAGAAGCTGTTGATGAGGAAGTTTCCGGCGATGTGTGCCAACACGAATCTCGTGGAGGACGAC AATCTGATCGAGCCGGTCGATACGAGTGGTGGCGGTGGCGATACGAGATGGGAAAGGTTGAAGAGGAACCATAAGGTTTATGCATTTCTAGCTGGTGGAC TTTCGCCAGTTACGGTGAAGGAGTGCATTTCGGAGGCCATATGTGCATCAAGCACGGATAATTACCCGGAAGAGACCATCCAGAACACGTTGCAGTCGAG GGATCGAGTGGAGAGTCATCGAGCTAACTATTGGTCGAGTAAGGGGCAAGCTCATGCTGATGTTCCTGAGAGATTGGTTTACAAGTTGGCTTCGAAACTC TGTCTCGTGTCTGAAATCCACGTCCAGGCTTTCCAAGCTTACTTTCAGTATGGATTCCCTATATACTCCTCTAAGGGCGTCCGGTTTAGACTCGGTCGGT CCAAGTTTCCAACCGAGCTAGAGGACGATGCAGCGATTGTGTCGTTCGGACATAAAGCTAGAGACGACCATTTCGTGTGGACTTATAGCTCGCCGGAATT CTCCATGGCTCAGGAGACCTGCTTGCAGAAGTTCAAGTTACCGGAACCGGTTCTCTGCATCGGAGGGATCTTGCAGATCGAGCTGCTTGGTCGAGTCCAG CGACAAGAAATCGACGGTCTATATTACATTTGCCTATCAAACGTGCAGGCGGTCGGGCAGCCACTCGTTAGGCCGTTTGACGTGGAACTCACTGATGCCA CCGGGGAATGCACGTTGAAGTACGTCCCGGAACGAGAAAGCAACGAGCTTGCCAGCGCGTCCGTTCGAGGGAAGCGACTTGCAGCTTCTCTGCTGCGTAC TTTCGTCGTCAGGCTGCTGCGCAGAGACGGTAGGGATCAAGCTAGCTCATCGGACCATGCCAATGCTTGA
AA sequence Show only first row Show all	>Lus10015001 pacid=23152755 polypeptide=Lus10015001 locus=Lus10015001.g ID=Lus10015001.BGIv1.0 annot-version=v1.0 MGFGLGIGFGFGFNQQTGSGFRSDSMMQAREKCGSDFMQWLGVDMSIQVLMHLDDPSDLVRICAVSSSWRQFVIEHCICKKLLMRKFPAMCANTNLVEDD NLIEPVDTSGGGGDTRWERLKRNHKVYAFLAGGLSPVTVKECISEAICASSTDNYPEETIQNTLQSRDRVESHRANYWSSKGQAHADVPERLVYKLASKL CLVSEIHVQAFQAYFQYGFPIYSSKGVRFRLGRSKFPTELEDDAAIVSFGHKARDDHFVWTYSSPEFSMAQETCLQKFKLPEPVLCIGGILQIELLGRVQ RQEIDGLYYICLSNVQAVGQPLVRPFDVELTDATGECTLKYVPERESNELASASVRGKRLAASLLRTFVVRLLRRDGRDQASSSDHANA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	0	1
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	1.7	0.9629
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	2.4	0.9508
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	2.4	0.9588
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	4.5	0.9527
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	5.5	0.9509
AT2G32070			Polynucleotidyl transferase, r...		Lus10017123 [exp]	6.0	0.9477
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	6.3	0.9486
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002302 [exp]	7.1	0.9466
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	8.7	0.9540
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	8.8	0.9481

Compare expression of checked genes

Lus10015001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.