Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62090 398 / 1e-126 SLK2 SEUSS-like 2 (.1.2) AT4G25515 352 / 2e-110 SLK3 SEUSS-like 3 (.1) AT4G25520 350 / 4e-109 SLK1 SEUSS-like 1 (.1) AT1G43850 237 / 2e-66 SEU SEUSS transcriptional co-regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038880 [exp] 990 / 0 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10029756 [exp] 245 / 4e-69 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10042785 [exp] 244 / 6e-69 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10006324 [exp] 233 / 2e-67 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10028635 [exp] 231 / 1e-65 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10029594 [exp] 207 / 1e-57 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2) Lus10018933 [exp] 184 / 4e-50 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2) Lus10000198 [exp] 0 / 1 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G136100 [exp] 490 / 2e-161 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 485 / 1e-159 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.003G121800 [exp] 285 / 5e-85 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.002G072900 [exp] 245 / 5e-69 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G186900 [exp] 241 / 1e-67 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 223 / 1e-61 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.013G089900 [exp] 96 / 9e-23 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 98 / 4e-21 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015002 pacid=23152813 polypeptide=Lus10015002 locus=Lus10015002.g ID=Lus10015002.BGIv1.0 annot-version=v1.0 ATGGCACCATCTCGTGTGACTGGAGGGTTAGCCCAATCGTCCTCAAGTTCTGGAATTTTCTTTCAGGGGGATGGACACTCCCAGGCTGTAGCTAATTCTC ACTTGAGCCAGTCGTTTGGAAACTCGTCCAGTTCGATTCAAAGAACTGGACATCCCAACCTGGGTCCGGTGGTATCTGGGGACATGAATAATTCAGTTTT GAACAGTGTCGCTAATTCAGGGGCGGGTGTTGGGGCGAGTTCAGTTGTCACTGATGCGAATTCAGCATTCTCTGGAGGCCCTCGTCTGCAGAGAAGTGCC AGCATTAACACGGATCCGCGCATGCCTGCTTCACCTATGTCTTTTACGTCCAATAATATAAGCATCTCTGGCAATTCAGCTCTCGACGGTTCTTCGGTTG TGCAGCAGGGAAATCACCAGGAGTCTAATGCGCAGCAGGTCCATCATAGTCAGCTTCAACAACGAGGGGCTTCGAGCGCTACGTCTTTGCCCACAGGACA AACTGGGCAACTCTCCATGGGTGCACGGGCTCCCCCCGGGTCTTATCTTCCGGACCATAACTTATCACAGGTGCAGAAGAAGCCCAGGCTAGATATAAAG CAGGAAGACATTCTGCAGCAGCAAGTGTTGCACCAGTTGCTACAGCGGCAGGATTCTATGCAGTTTCAAGACAATAATCCACAGCTACAAAGTCTGCTTC AGCAGCAAAGACTCAGGCAGCAGCAACAAATTCTTCAATCGATGCCACCAATGCAAAGAGCCCATTTGCAGCAACAGCAGCAGCTTCAGATGAGGCAGCA AATGCAACATCAGGCCATGCAGCCAGCTCCGGCCCCTGTGAAGCGTCCCTATGATGGGGGAGTATGTGCCCGCCGGATGATGCAGTACCTTTATCATCAG AGGCAGAGGCCAGCAGAAAATACTATTGCGTATTGGCGAAAATTCGTAGCTGAGTACTATGCTCCTCGGGCAAAGAAAAGATGGTGCTTGTCATTATATG AAAATGTTGGGCATCATGCCCTTGGTGTATTTCCCCAAGCAGCAATGGAGGCATGGCAGTGTGACATCTGTGGTTCAAAGTCCGGAAGAGGATTCGAGGC AACTTACGATGTGTTACCGCGACTAAATGAAATCAAGTTCGGGAGTGGTGTCATAGACGAGCTTTTATTTTTCGACTTGCCCCGTGAATCTAGATTGCCT TCTGGATTACTGATGCTGGAGACTCTATTTGAACAGGTAAATCAGCTAGTACAGGTTGCACAGAAATGCCAAAGCACAATCTCCGAAAGTGGACCTGATG GCGTTTCACAGCAGGATCTCCAAGCAAATAGCAATATGGTTGTGACGGCTGGGCGGCAGCTTGCTAAAAGTTTGGAGTTGCAATCGTTGAATGATTTGGG ATTCTCCAAACGATACGTTAGATGTTTGCAGATCTCTGAGGTTGTCAATAGCATGAAGGACTTGATTGATTTCTGCGGAGACCAAAAATCTGGGCCAATA GATAGCCTGAAAAACTACCCTCGACACACCGATGCAGTTAAGCAGCTCCAGATGCAAAAGATGCAAGAGATGGAGCAGCTGGCGAACGCTCAGGGTCTAC CGTCCGATCGGAACACCCTCAATAAGCTTATGGCATTGTACCCCGGAATAAACAGCGCCATGAACAGCAACAACCGAGGAGCTTTAAGCGGCCCGGCCCA GGCTGCAATGGCGCTCTCAAACTACCAGTCTCTTCTTTCGAGGCAAAACTCGATGAACTCGAACTCGAGCTCACACCAACAAGAGCAGCAGCAGCAGCCA ACTTCATCGTTCAACAATTCCCGCCGTAGCCCTTCTCCGAGTTTCCAGGGACCCAGTAATGCCGCTGCTGCTGCTTTTGCATCAGGATCCGTGCAGAACT TACGGGGAAGAGGGTATCTACCTCCCCAGCAGTCGCTCCAACAGCAGCGTTCGTTGAGCTCTAACGGCCTACTAGCGCCCCAAGGCAGTAATCCAGCGGT CTTGCAACAGCAAATGATGCAGCATCTTCTGCATGACATGTCGAATAACACCAACCGGGGAGGGAATAATCACCCACAGCAGCAGCAGCAGCAGCCTTCG ATTTCTGCACCAAACGGGTCAGGAGGAAAGAACGGTGTAGTTAACAAATCAGCAGCAAGTCCGGCCATGTCCGGAGGCGTTACCGGTCCTGCACCACCGA GCCGGAGCAACAGCTTCACATCTGCTCCTNNNNNNNNNNNNNTCCTCCTGCTCGGGCCCCTGCTGCTGCTACAGCAGAGACCAGCGATTCTTCTGCAGCT GGCGGGGGCGGTACGAGCGAGTACAATCATAATAATCATAAGGCGGCGACCGTAG
AA sequence Show only first row Show all	>Lus10015002 pacid=23152813 polypeptide=Lus10015002 locus=Lus10015002.g ID=Lus10015002.BGIv1.0 annot-version=v1.0 MAPSRVTGGLAQSSSSSGIFFQGDGHSQAVANSHLSQSFGNSSSSIQRTGHPNLGPVVSGDMNNSVLNSVANSGAGVGASSVVTDANSAFSGGPRLQRSA SINTDPRMPASPMSFTSNNISISGNSALDGSSVVQQGNHQESNAQQVHHSQLQQRGASSATSLPTGQTGQLSMGARAPPGSYLPDHNLSQVQKKPRLDIK QEDILQQQVLHQLLQRQDSMQFQDNNPQLQSLLQQQRLRQQQQILQSMPPMQRAHLQQQQQLQMRQQMQHQAMQPAPAPVKRPYDGGVCARRMMQYLYHQ RQRPAENTIAYWRKFVAEYYAPRAKKRWCLSLYENVGHHALGVFPQAAMEAWQCDICGSKSGRGFEATYDVLPRLNEIKFGSGVIDELLFFDLPRESRLP SGLLMLETLFEQVNQLVQVAQKCQSTISESGPDGVSQQDLQANSNMVVTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCGDQKSGPI DSLKNYPRHTDAVKQLQMQKMQEMEQLANAQGLPSDRNTLNKLMALYPGINSAMNSNNRGALSGPAQAAMALSNYQSLLSRQNSMNSNSSSHQQEQQQQP TSSFNNSRRSPSPSFQGPSNAAAAAFASGSVQNLRGRGYLPPQQSLQQQRSLSSNGLLAPQGSNPAVLQQQMMQHLLHDMSNNTNRGGNNHPQQQQQQPS ISAPNGSGGKNGVVNKSAASPAMSGGVTGPAPPSRSNSFTSAPXXXXXLLLGPLLLLQQRPAILLQLAGAVRASTIIIIIRRRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	0	1
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	1.7	0.8970
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	3.2	0.8804
AT5G35753			Domain of unknown function (DU...		Lus10012334 [exp]	3.9	0.8798
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10043236 [exp]	4.4	0.8244
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10043330 [exp]	4.9	0.8483
AT1G16560			Per1-like family protein (.1.2...		Lus10015006 [exp]	6.9	0.8509
AT2G22370			unknown protein		Lus10023150 [exp]	8.5	0.8255
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10034844 [exp]	9.0	0.8173
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008928 [exp]	10.9	0.8256
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	13.0	0.8410

Compare expression of checked genes

Lus10015002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.