Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02405 335 / 5e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G42760 48 / 4e-06 Leucine carboxyl methyltransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038881 [exp] 629 / 0 AT4G02405 334 / 2e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10032713 [exp] 48 / 6e-06 AT5G42760 467 / 2e-166 Leucine carboxyl methyltransferase (.1.2) Lus10000713 [exp] 42 / 0.0006 AT5G42760 458 / 9e-163 Leucine carboxyl methyltransferase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203900 [exp] 423 / 9e-150 AT4G02405 324 / 2e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G260300 [exp] 52 / 3e-07 AT5G42760 483 / 9e-173 Leucine carboxyl methyltransferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04072 [flax] [poplar] LCM Leucine carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015003 pacid=23152731 polypeptide=Lus10015003 locus=Lus10015003.g ID=Lus10015003.BGIv1.0 annot-version=v1.0 ATGGCGCATATGGAATGCCTTCTGGGCTCGACTCGTTCAATCGCCATAGCCTTCCCGCCGTTTTCTGCTCCCAATTCCAGAAGACATCATCGTCGTCATC ATCATGGGTTGAAAGCCACGCTAACGTCCGAGACTGATCCGTTATTCCAATCCGCCATGAACTCAGCTTCCCTTCGCTTCCAGGAGACTCATCGGCCAGA GCCTTTACTGGTTGATCCATATGCCGGTTGCTTTGTTGACCCTAACATGCAGATGGGTTTGAAGAAGAACCCACATCCTTACTGCGTTGCGACCAAGTTC GTAGACGATAAGTTGCTTCGAACTGTGCATCATATCGATGGACTGAAGCAGGTTGTTCTCTTAACCGATGGAATGGACACTCGGCCTTATCGACTGAACT GGCCTTCTTCTACCATGATCTTCGACGTATCCCCCGAACGGATATTCAAAACGTCTGCCCAGAAGCTTGAAGGTGTTGGAGCTAAAATTCCAAGACGGTG CTTACACGTACACGTACCAATGGAGTCCCCCGATATCGAAAAGGCCCTCCGTGCTAAAGGATTCAACGGTAATCTGTCCAGTATATGGGCATTGCAGGGA CTACCGATTATGACTCTGGCGAGCTTCGAACAGATTCTGTACGTCGCTAGCTGCTTGGTGGTGAAAGACAGCTCATTCATCGGCGAACTGCCAGCTTGGT TATCCGAAACAGAAATCGGAGCCACCACCAAGCCAAGTACGAACAAGTGGATGAGCAAGCTGTTCATGAGCAACGGATTCAAGGTCGACACGATTGGATA CGACGAAGTTGCGACAAGTTTGGGCAAAGAACTCGCACCAGGAAGCCACAACAACATTCTGTTTGTTGCGGAACAGTTGCGGTTTTCAGATGATCAGATG GAAACTTGGAGAAGAGAGTTTCAGAGGGTAGACGGTGAAGCTGATGAAGACGGATTCGATGAGCTCTAA
AA sequence Show only first row Show all	>Lus10015003 pacid=23152731 polypeptide=Lus10015003 locus=Lus10015003.g ID=Lus10015003.BGIv1.0 annot-version=v1.0 MAHMECLLGSTRSIAIAFPPFSAPNSRRHHRRHHHGLKATLTSETDPLFQSAMNSASLRFQETHRPEPLLVDPYAGCFVDPNMQMGLKKNPHPYCVATKF VDDKLLRTVHHIDGLKQVVLLTDGMDTRPYRLNWPSSTMIFDVSPERIFKTSAQKLEGVGAKIPRRCLHVHVPMESPDIEKALRAKGFNGNLSSIWALQG LPIMTLASFEQILYVASCLVVKDSSFIGELPAWLSETEIGATTKPSTNKWMSKLFMSNGFKVDTIGYDEVATSLGKELAPGSHNNILFVAEQLRFSDDQM ETWRREFQRVDGEADEDGFDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	0	1
AT5G64380			Inositol monophosphatase famil...		Lus10020433 [exp]	1.0	0.9574
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	2.8	0.9264
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017704 [exp]	3.0	0.9079
AT2G12400			unknown protein		Lus10008813 [exp]	3.5	0.9213
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	5.5	0.9114
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	7.1	0.9053
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	7.9	0.9098
AT3G47570			Leucine-rich repeat protein ki...		Lus10030630 [exp]	9.5	0.8944
AT5G67350			unknown protein		Lus10010401 [exp]	9.6	0.8935
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	10.8	0.8860

Compare expression of checked genes

Lus10015003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.