Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52060 282 / 8e-94 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G07220 276 / 4e-92 ATBAG3 BCL-2-associated athanogene 3 (.1) AT5G62100 258 / 2e-85 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT3G51780 142 / 2e-40 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G14360 88 / 4e-21 Ubiquitin-like superfamily protein (.1) AT5G40630 80 / 7e-18 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038882 [exp] 470 / 3e-168 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10027420 [exp] 363 / 9e-126 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10005772 [exp] 313 / 3e-106 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10006328 [exp] 190 / 5e-59 AT5G52060 194 / 2e-60 BCL-2-associated athanogene 1 (.1) Lus10023279 [exp] 189 / 6e-59 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10029598 [exp] 189 / 1e-58 AT5G52060 195 / 8e-61 BCL-2-associated athanogene 1 (.1) Lus10005051 [exp] 134 / 8e-36 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10027822 [exp] 129 / 9e-35 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10003393 [exp] 87 / 7e-20 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135500 [exp] 355 / 2e-122 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.012G133400 [exp] 344 / 4e-118 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.003G121500 [exp] 234 / 7e-76 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.001G110300 [exp] 228 / 1e-72 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.001G358200 [exp] 189 / 2e-58 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.001G279500 [exp] 155 / 3e-45 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.009G074300 [exp] 151 / 5e-44 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.016G121200 [exp] 102 / 3e-25 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1) Potri.001G339100 [exp] 85 / 1e-19 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10015004 pacid=23152733 polypeptide=Lus10015004 locus=Lus10015004.g ID=Lus10015004.BGIv1.0 annot-version=v1.0 ATGATGATGGGGATGAAGACTAACGGCGGCGGCGGAGATTCCGCCGCCGGAGCAGAGTGGGAAGTCCGTCCTAGCGGGATGCTGGTACAGAAACGGAACC CGGATTCCGACCACCGGTCAATCCCCCCACCGACAATCCGGGTCCGGGTCAAGTTCGGGTCAACGTACCACCAAATCAACATCAGCTCGCAAGCCACATT CGGGGAAGTGAAGAAGATGCTGACGGGGCCGACGGGGCTGCACCATTTGGACCAGAAGCTGATGTACAAGGACAAAGAGAGGGATTCGAAGGCGTTTCTG GATGTTGCAGGGGTGAAGGACAAGTCGAAAATGGTGGTTATGGAGGATCCGATTAGCCAGGAGAAGAGGTATCTGGAGATGAGGAAGAATGCTACAATGG AGAAGGCTTCCAAGTTGATTTCTCAGATTAGCTTGGAGGTTGATCGGCTTGGTGGAAGGGTGTCTGGTTTGGAGTCGGTGATTAGTAAAGGAGGGAAAGT GGATGAGAAGCAAGTTCTTGGGTTGATTGAGCTGCTGATGAATGAGTTGTTGAAGTTGGATGGGATCATGGGTGATGGAGATGTCAAACTGCAGAGGAAA TTGCAGGTGAAGAGGGTACAGAAGTATGTAGAGACACTGGACATGTTGAAGGTCAAGAACTCCAACCTTTCCAACGGAAGCCAGAACAAATCGACACAGC ATCATCAGCGCAGGCCGTCCAATGGACATAGTAGATTAGCTCCCATTGATGAAGAGCAGCACCAGCAGCATCAAGAACAGCAGCCAAAATCGAGGAATTC GAGTGGACCACCAGTGGTTGTTACAACACAATGGGAAACATTCGATGCAACACCATCGCCACAGCCGCCATTACCACAATCATCTGCCAACAACAACAAC AGTTCAGCTCATAACCAGCAGCCGAAATTCCCGTGGGATTTCTTTGGTTGA
AA sequence Show only first row Show all	>Lus10015004 pacid=23152733 polypeptide=Lus10015004 locus=Lus10015004.g ID=Lus10015004.BGIv1.0 annot-version=v1.0 MMMGMKTNGGGGDSAAGAEWEVRPSGMLVQKRNPDSDHRSIPPPTIRVRVKFGSTYHQINISSQATFGEVKKMLTGPTGLHHLDQKLMYKDKERDSKAFL DVAGVKDKSKMVVMEDPISQEKRYLEMRKNATMEKASKLISQISLEVDRLGGRVSGLESVISKGGKVDEKQVLGLIELLMNELLKLDGIMGDGDVKLQRK LQVKRVQKYVETLDMLKVKNSNLSNGSQNKSTQHHQRRPSNGHSRLAPIDEEQHQQHQEQQPKSRNSSGPPVVVTTQWETFDATPSPQPPLPQSSANNNN SSAHNQQPKFPWDFFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10015004 [exp]	0	1
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	1.0	0.9481
AT3G52020		SCPL39	serine carboxypeptidase-like 3...		Lus10039582 [exp]	2.4	0.9315
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10013361 [exp]	3.7	0.8887
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10043157 [exp]	10.8	0.9089
AT1G62790			Bifunctional inhibitor/lipid-t...		Lus10024591 [exp]	13.9	0.8531
AT5G07740			actin binding (.1)		Lus10017556 [exp]	18.0	0.8675
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10004522 [exp]	20.0	0.8981
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10024859 [exp]	20.5	0.8997
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10018801 [exp]	20.6	0.9114
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10040521 [exp]	28.8	0.8849

Compare expression of checked genes

Lus10015004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.