Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52030 426 / 2e-142 TraB family protein (.1.2) AT4G25500 285 / 1e-88 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT5G52040 270 / 6e-83 ATRSP41, RS41, At-RS41 arginine/serine-rich splicing factor 41, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G61860 244 / 6e-75 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G46610 217 / 6e-65 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G05270 98 / 9e-22 TraB family protein (.1) AT2G32340 82 / 2e-16 TraB family protein (.1) AT1G02840 50 / 2e-06 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 48 / 6e-06 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G35785 48 / 8e-06 RNA-binding (RRM/RBD/RNP motifs) family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038884 [exp] 615 / 0 AT5G52030 458 / 3e-161 TraB family protein (.1.2) Lus10038883 [exp] 397 / 9e-132 AT4G25500 206 / 7e-64 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Lus10030226 [exp] 223 / 8e-67 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005986 [exp] 215 / 5e-64 AT3G61860 300 / 3e-103 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038420 [exp] 104 / 2e-23 AT1G05270 371 / 6e-127 TraB family protein (.1) Lus10015104 [exp] 97 / 2e-21 AT1G05270 447 / 4e-158 TraB family protein (.1) Lus10031571 [exp] 82 / 9e-17 AT1G05270 368 / 3e-127 TraB family protein (.1) Lus10023387 [exp] 77 / 2e-14 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10015564 [exp] 55 / 8e-08 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G133900 [exp] 488 / 6e-167 AT5G52030 426 / 7e-149 TraB family protein (.1.2) Potri.015G135800 [exp] 310 / 1e-97 AT4G25500 322 / 5e-108 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.012G133600 [exp] 300 / 2e-94 AT4G25500 316 / 2e-106 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.002G153600 [exp] 284 / 5e-90 AT4G25500 264 / 7e-88 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.014G076600 [exp] 263 / 5e-82 AT4G25500 255 / 3e-84 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.014G101800 [exp] 217 / 1e-64 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G175000 [exp] 216 / 1e-64 AT3G61860 291 / 8e-100 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G121800 [exp] 92 / 7e-20 AT1G05270 323 / 6e-109 TraB family protein (.1) Potri.007G121900 [exp] 92 / 2e-19 AT1G05270 404 / 7e-140 TraB family protein (.1) Potri.017G038500 [exp] 79 / 1e-15 AT1G05270 417 / 1e-146 TraB family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0572 [flax] [poplar] TIKI PF01963 [flax] [poplar] TraB TraB family
Representative CDS sequence Show only first row Show all	>Lus10015005 pacid=23152729 polypeptide=Lus10015005 locus=Lus10015005.g ID=Lus10015005.BGIv1.0 annot-version=v1.0 ATGGAGATTCTTCTCAAATCCACGTTCCCAATCTCTTCCCGCCGCCGACTTCCCGCCAAACCAACCAGACCCGCCAAATCCTTATCCGTAGCGATCAAAC CACCACCACCGGACTTCGACTTCCGCTCGTCGGAGATTTGTCAGGAATCCCGCGCCACAATCTCAGCAATCCACCCGGAGCTAGCCGACTTGGCCAACGA CGGCACATTAGTCCTCCTCCAGAAGAAACGCTATGGTCCGGTCCCCGCCTGGAGAACCGAATTCGACGAGCCGGAGGCGATATGGCTGGTGGGAACCTCT CACATCTCCGACGAATCCGCGGCGGACGTTGAGCGTGTTGTCCGGGCTGTGAAGCCCGACAACGTCGTCGTCGAGCTCTGCCGAAGCAGAGCTGGCATCA TGTACACTTCCAGCAATGAGGGGTCAGAGCAAGATCAGATGCAATCGAGTGTGTTTTCGTTGAGTGGGGATGGATTCTTCGGCGCCGTCGGTCGTAGCTT GAATTTAGGAGGCCAAACGGCTCTCGCTCTGAGACTTCTCCTAGCGATGTTCTCTTCCAAGGTTTCCTCTGATGCCAATCGTCCCTTTGGGAATGAGTTC CGAGCTGCTCGAAAGGTGTCGGAGGAAGTTGGAGCTCAACTAGTCCTAGGAGATCGTCCAATCGAAATCACTCTTCAAAGGGCTTGGAAGTCTCTGGAAT GGAGTGAGAAGCTCAGCTTGTTGAGAGCAGTAGTTAAAGGGATCACATCATCATCAACTGTTCGCGCCACTTCCCTGGCAACAGCAATGGCAGACGAGGA GGACACAGATGCCTCGTTCCGGCTCTACGAGCAGCTAAGCTTTTCGTACCCGTCGCTGCTGAACCCTCTGATCCACGAACGAGACACCTACTTGGCGTGG TCTTTGAAACGGAGCAAAGCGGTGAACCATGGGAAGAACGTAGTGGGGGTGATAGGGAAAGGCCACATGAACGGCGTCGTATACGCGCTCGTCTCCGACT CGGGAGACCTCCGGTTCCGGGACCTCGTCGGGAACAGGGACGGTGGTGGTGGTGGCTCTTCGTCGTTTGTTAATGATGTCCTCAAGGGGCTTGTTAGGGA CACGGTGATCGGCGTCCTGGTTTGGCAGAAAAACTCACCGGAAGGTTGTTCGCCCGGTAAAGTCATCGGACCTCGGGTCTGCGAGGACATTCCAGACACC GAAGCTTTGGTGAAGATGAGGCCTATCTTTTGCGGAAACTTTGAGTATGATGCTCGCCAATCTGAGCTAGAGCGGCTTTTCAAACGCTATGGAAGGGTTG AAAGGATCGACATGAAGTCTGGATCCTTTGATGGGAGGATTAGTTCTCTTTTGTGCTGTTTCTTGGTACTGCTTATGGTTTACAATGGTACTCAGGTTAT TTACTTTTTGTATCTACAAGCAGGATTTGCTTTCATATATATGGAAGATGAAAGAGATGCTGAGGATGCAATTCGAGGACTCGACCGCACAGAATTTGGC CGCAAGGGTCGCAGACTTCGTGTTGAATGGACAAAGCAAGAACGTGGCGCCAGAGGGGCAGGAGGTGGCCGCGGTGGTGGTAGTTCTAAGAGATCTGCCA ACTCTAGACCTTCTAAGACCTTATTCGTTATCAACTTCGATCCGAATCTCACGAGGACAAGAGACTTGGAGAGGCATTTCGAATCCTACGGGAAGATAAC AAGTGTGAGGATTAGGAGAAATTTCGCCTTCGTTCAGTATGAAGCACAAGAGGATGCAAGCAAAGCCCTTGAAGCTACAAACATGAGTAAGTTGATGGAC CGAGTCATTTCGGTCGAATATGCAGCTCGAGACGATGACGAGAGGAAAGACGGCGGTGGGGGCGGCTATAGTCCCGACAGGACTCGCGATCGATCCCCGA GGAAGCGGTCCGTGAGTCCCTATAGAAGAGTTAGGGGTAGCCCAGATTACGGCCGCGGCACTAGGGAGAGGGGTAGCCCTGACTATGGTCGTCGCGGTGG GCGCAGTCCGAGTCCATCCTACAAGAAGGAACGATCCAGCCCGGTATACGCCGGTCGTCGCGGCGGCCGCAGCCCGAGTCCCTACAAGAAGGGAGGAAGA TCCAGCCCTGACTATGCTCGTGAATCGAGCCGAAGCCCTGCTTACAAGAGGGAGAGAGGAGGCAGCAGCCGGAGCCCCTACCGTAGGGAGAGGGGTGAAA ATCCCGACAATGGCCGCGGACATGGACGGGGCGAGGAACGGGACAGGGAAGAAGCTGAGATCGGTAACGGCGTTGACCACTCTCCCGACGGGAGAGAGAC CGGTGAGGTGAAGGATGACCGCCGTTCGTACGAGAGGGACGATGGACGCAGCCCTAGTAACGGTCGCCCGGCTTCGGTGCCGGAAGACGAGAGGGACAAA GACGAGAGGGACGCAGCTGAAGCTGATAGCCCCGCCCCGGACCGATACAGCAGCCGATCACCAGCCGCAGACGAATAA
AA sequence Show only first row Show all	>Lus10015005 pacid=23152729 polypeptide=Lus10015005 locus=Lus10015005.g ID=Lus10015005.BGIv1.0 annot-version=v1.0 MEILLKSTFPISSRRRLPAKPTRPAKSLSVAIKPPPPDFDFRSSEICQESRATISAIHPELADLANDGTLVLLQKKRYGPVPAWRTEFDEPEAIWLVGTS HISDESAADVERVVRAVKPDNVVVELCRSRAGIMYTSSNEGSEQDQMQSSVFSLSGDGFFGAVGRSLNLGGQTALALRLLLAMFSSKVSSDANRPFGNEF RAARKVSEEVGAQLVLGDRPIEITLQRAWKSLEWSEKLSLLRAVVKGITSSSTVRATSLATAMADEEDTDASFRLYEQLSFSYPSLLNPLIHERDTYLAW SLKRSKAVNHGKNVVGVIGKGHMNGVVYALVSDSGDLRFRDLVGNRDGGGGGSSSFVNDVLKGLVRDTVIGVLVWQKNSPEGCSPGKVIGPRVCEDIPDT EALVKMRPIFCGNFEYDARQSELERLFKRYGRVERIDMKSGSFDGRISSLLCCFLVLLMVYNGTQVIYFLYLQAGFAFIYMEDERDAEDAIRGLDRTEFG RKGRRLRVEWTKQERGARGAGGGRGGGSSKRSANSRPSKTLFVINFDPNLTRTRDLERHFESYGKITSVRIRRNFAFVQYEAQEDASKALEATNMSKLMD RVISVEYAARDDDERKDGGGGGYSPDRTRDRSPRKRSVSPYRRVRGSPDYGRGTRERGSPDYGRRGGRSPSPSYKKERSSPVYAGRRGGRSPSPYKKGGR SSPDYARESSRSPAYKRERGGSSRSPYRRERGENPDNGRGHGRGEERDREEAEIGNGVDHSPDGRETGEVKDDRRSYERDDGRSPSNGRPASVPEDERDK DERDAAEADSPAPDRYSSRSPAADE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52030			TraB family protein (.1.2)		Lus10015005 [exp]	0	1
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	2.2	0.8125
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10015272 [exp]	4.0	0.8033
AT5G22120			unknown protein		Lus10004788 [exp]	6.0	0.7772
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	6.9	0.8078
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	8.5	0.8046
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	14.1	0.7645
AT1G02330			unknown protein		Lus10042403 [exp]	14.8	0.7534
AT1G71080			RNA polymerase II transcriptio...		Lus10004071 [exp]	15.2	0.7217
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	18.3	0.7787
AT5G25170			PPPDE putative thiol peptidase...		Lus10018326 [exp]	24.7	0.7157

Compare expression of checked genes

Lus10015005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.