Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16560 413 / 6e-145 Per1-like family protein (.1.2.3.4) AT5G62130 408 / 6e-143 Per1-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038885 [exp] 679 / 0 AT1G16560 417 / 2e-146 Per1-like family protein (.1.2.3.4) Lus10027411 [exp] 509 / 0 AT1G16560 393 / 5e-137 Per1-like family protein (.1.2.3.4) Lus10031658 [exp] 427 / 4e-150 AT5G62130 328 / 3e-111 Per1-like family protein (.1.2) Lus10031187 [exp] 422 / 9e-149 AT1G16560 495 / 2e-177 Per1-like family protein (.1.2.3.4) Lus10031765 [exp] 426 / 6e-144 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134300 [exp] 505 / 0 AT1G16560 466 / 8e-166 Per1-like family protein (.1.2.3.4) Potri.015G136600 [exp] 473 / 8e-169 AT1G16560 477 / 2e-170 Per1-like family protein (.1.2.3.4) Potri.007G065800 [exp] 464 / 5e-165 AT1G16560 538 / 0.0 Per1-like family protein (.1.2.3.4) Potri.002G177300 [exp] 0 / 1 AT1G16560 0 / 1 Per1-like family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF04080 [flax] [poplar] Per1 Per1-like family
Representative CDS sequence Show only first row Show all	>Lus10015006 pacid=23152762 polypeptide=Lus10015006 locus=Lus10015006.g ID=Lus10015006.BGIv1.0 annot-version=v1.0 ATGGATTGGCGCCGCAGCCGATTTGTGTTCTTTGTTGCGTTCATCTGCTTGCTCCGTCCACTTCGCGCCAGCGAAGGCGACGCCGATCCGGTTTACAAGG GCTGTGTGGAGGAGTGTCAGACGACTGGATGCGTGGGGAAGAACTGCTTCCAGCACTGCAAATTCTCGTCGGATGGGAAGCCGATTGATGGTCCTTGGTA TCTTCAGGAGCCGCTTTATCAGAGGTGGAAGCAATGGGACTGTAGGAGTGACTGTCAGTATAACTGTATGATTGTTAGGGAGGATGAGAGGTTGGAGCTT GGTCTTAGTCCTGTCAAGTACCATGGGAGATGGCCGTTTCATCGTGTTTATGGTATCCAGGAACCGCTTGCTGTTGGTTTAGCTGCAGTCATTCTTGCGA TTCAGTTTCATGGCTGGATATCATTTTTCATCCTTGTGAACTACAAGCTGTCGTTGAGGCCAGATAAGAAGACTTACTATGAATACACTGGTCTTTGGCA CCTCTATGCGATGCTTTCAATGAATGCCTGGCTCTGGTGTGCTGTTTTCCATACTCGGGATGTCGAGTTGACAGAGAAACTATACTGTTCATCCACAGTG GCATGGCTAGGCTTCACCCTCATCTTAGCAACGCTTCGAGCTTTCAACATAAGAGACGAAGCCGCAAGAGTCATGGTAGCTGCCCCAGTGATTGCTTTCA TCACTACACACATCTTGTACTTGAACTTCTACAACTTCGACAAAGGTCTCAACTCCAAAGTGAGCGCAGCAATAACAGTCGTCCAGGTCCTGATATGGGC AGTCTGGGCTACGGCCACTCGCCACCCATCCCGATGGAAAGTGTGGGTCACCGTCTTTGTAGGAGGAGCTCTCTCCTTGATCCTGGAAGCCTACGACTTC CCTCCATACCAGAGATTCGTCGATTCTCGAGCCATCTGGCACGCTCTAGCCGTCCCCTTCGGTTACATCTGGTGGAGCTTTGTCAGAGACGACGCCGAGT TCAGCACGTCTAGCCTCCTCAAGAAAACCAAGTAA
AA sequence Show only first row Show all	>Lus10015006 pacid=23152762 polypeptide=Lus10015006 locus=Lus10015006.g ID=Lus10015006.BGIv1.0 annot-version=v1.0 MDWRRSRFVFFVAFICLLRPLRASEGDADPVYKGCVEECQTTGCVGKNCFQHCKFSSDGKPIDGPWYLQEPLYQRWKQWDCRSDCQYNCMIVREDERLEL GLSPVKYHGRWPFHRVYGIQEPLAVGLAAVILAIQFHGWISFFILVNYKLSLRPDKKTYYEYTGLWHLYAMLSMNAWLWCAVFHTRDVELTEKLYCSSTV AWLGFTLILATLRAFNIRDEAARVMVAAPVIAFITTHILYLNFYNFDKGLNSKVSAAITVVQVLIWAVWATATRHPSRWKVWVTVFVGGALSLILEAYDF PPYQRFVDSRAIWHALAVPFGYIWWSFVRDDAEFSTSSLLKKTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16560			Per1-like family protein (.1.2...		Lus10015006 [exp]	0	1
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	1.4	0.9111
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	1.4	0.9074
AT3G22430			unknown protein		Lus10041205 [exp]	6.7	0.8599
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	6.9	0.8509
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	9.2	0.8757
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	11.4	0.8441
AT5G24500			unknown protein		Lus10032937 [exp]	12.1	0.7829
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	14.3	0.8713
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	14.5	0.8133
AT5G35753			Domain of unknown function (DU...		Lus10012334 [exp]	20.1	0.8348

Compare expression of checked genes

Lus10015006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.