Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25450 792 / 0 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) AT5G39040 221 / 2e-62 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT1G02520 224 / 5e-61 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT2G36910 223 / 8e-61 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G10680 222 / 2e-60 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT3G28390 221 / 5e-60 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28415 220 / 8e-60 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT1G02530 219 / 1e-59 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT3G28345 219 / 2e-59 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT4G25960 218 / 4e-59 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038886 [exp] 1132 / 0 AT4G25450 879 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) Lus10036616 [exp] 232 / 2e-68 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10007987 [exp] 224 / 1e-63 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10035834 [exp] 231 / 2e-63 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10021145 [exp] 218 / 3e-61 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10004583 [exp] 221 / 4e-60 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10043069 [exp] 221 / 5e-60 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10023929 [exp] 220 / 8e-60 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10014427 [exp] 219 / 1e-59 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G136700 [exp] 850 / 0 AT4G25450 953 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) Potri.015G059700 [exp] 228 / 7e-65 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 227 / 2e-64 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059800 [exp] 227 / 2e-64 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.016G093600 [exp] 229 / 8e-63 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 229 / 9e-63 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.017G097200 [exp] 217 / 7e-61 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.014G113500 [exp] 218 / 4e-59 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.011G133800 [exp] 217 / 8e-59 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 216 / 2e-58 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10015007 pacid=23152818 polypeptide=Lus10015007 locus=Lus10015007.g ID=Lus10015007.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCTCCGACCACCACCACCACAACCACATTCCTCAACTCCAACCACACGCGCTTCCGTCTCCCGTTTACCCCCCACGCGCCTAACCTCAGCC TCAACCTCTCCCGCAATCGTCGTCCTCTTCAATTCCGTCACTCCTCCTCCTCCCTACAATATTTCCCGCCAATTCAACAGTCTCATCGGCGAACGGCGGC CACTCCATTCGCCTACGTCACCGGCCCGGCCTCCGACCCGAATACGACCGATCCTGACCCGAAATCCTCCTCAAACGAGGATGACGACGGCGATGAAGAG GACACTTCATCGTCGAAGAAGCTGATAACGTGGAGGCTACTGTCGAGCTTGTTGCTTCAGCATAAGCTGAGAATTGGTATTTCGGTGCTGGCGCTTGTTG GATGCACTACTTGTACACTCTCCATGCCGATCTTTTCAGGGAGATTTTTTGAAGTGCTGGTTGGTGTAAGGCAGGAGCCGCTGTGGAAGCTGCTGTGCAA AGTCGGACTAGCGTACGCCATGGAACCGATTCTTACAGTGATGTATGTTGTTAACATGAATGTTGTTTGGGAGAGTGTGATGTCCACGCTTAGAGCTCAG TTGTTCAGAAGAGTTCTGATTCAAAAGGTGGAGTTTTTCGATCGGTACAAGGTATGGTTTCGACGAACTGTTAATTCGATGAGAGGGGCTCGTCTTCTGA TCCTTGGGGTGGTATGCATCCTGTTCACTTTAGCTCCTCAGCTGGCTCCAGTTTTGGGAATCCTGATATTTTCGATTTCTGTTTTAGCTGTCTTCTTCGG TCCTGATAATCTTATATGCTTTCTGGCCATTCCTGATTGGTACCATTGCGTTGTAGCTGTATACAAGCGATCAACTCTTCCCGTTTTCAGAAGTCATGGA GCGACTCAAGCATCCATGTCTGACTGTGTAACGGAGACTCTCTCGGCTATTCGCACTGGGAGATCATTTAGTGGTGAACAGCGCCAAATGTTGATGTTCG GTGACCAGTTTGTGGGCATCATAGCTTTTGCTAGTGTAACAAAGAAACTTGGCAGGTTCTGGCATATCGGCGTAGTGGCATTAGGCTTGGGATGTTCAAG TCTTGAACAGCGCCAAATGTTGATGTTCGGTGACCAGGTTCTGGCATATCGGCGTAGTGGCATTAGGCTTGGGATGTTCAAGTCTCTAAATGAATCCGTG ACAAGAGCAGCTGTATACATCTCTCTGATTGCTCTGTATTGTCTCGGAGGAAACAAAGTGAAGGCTGGTGAAATTTCTGTTGGAACTTTCGCTTCCTTTA TCGGATATACTTTCACGTTGACATTTGCTGTTCAAGGCCTGGTCAATACATCCGGGGATCTTCGTGCAACTCTTGCTGCCGTTGAAAGGATTAATTCTAT CCTGACCGGAGTAGAAGTTGACGAAACCCTTGCCTATGGTTTAGAGAAGGAGATCCAGCAGAAGGAACACAAAAACGAGGCTCTTAAACTGTTTGCTGAC AATGGCCATACCAGGAAGAGCTCTCGAAACTTGCATTACATGTCGGCCTTGAAATCGGCCAATGACCTATATAACAGTGCCTGGTCTGCCGACATTTGTC TCGAAGACGTGCATTTCTCTTATCCCTTGAGACCTGACGTGAATATACTTAGCGGTCTTAACTTGACTCTGAAGCGTGGAACCATCACTGCTCTAGTTGG CCCAAGTGGTGCAGGCAAAAGCACCATAGTGCAGCTGTTAGCACGATTCTACGAGCCAACCAAAGGTCGAATAACCATTGCGGGGGAAGATATCAGGAAT TTCGAAAAAACGGAATGGGCTCGTGTTGTCTCGATCGTAAACCAAGAACCAGTTCTTTTCTCGGTGTCGGTGGGAGAGAACATCGCGTACGGGCTTCCTG ATGAAAATGTGTCCAAAGATGACATTATCAAGGCTGCCAAAGCTGCGAATGCACATGAGTTCATAGTTTCACTTCCACAGGGCTACGACACTCTAGTTGG TGAGCGCGGAGGCTTGCTGAGTGGAGGCCAGAGACAGAGGATCGCCATCGCGAGAGCTCTTCTCAAGAACGCCCCGATCCTCATCCTGGACGAGGCCACA AGTGCACTAGATGCGGTAAGCGAACGCCTAGTACAGCAAGCGCTCAACCACCTAATGAAAGGCAGGACGACGCTGGTGATCGCGCACAGACTAAGCACAG TCCAGAACGCGCACCAGATCGCAGTCTGTTCCGACGGCAGAGTCGCCGAACTAGGTAACCATTCCCAGTTGCTTGCCAGCAAAGGTAAGTACGCTACCTT AGTCGACACTCAAAGACTCGCTTTTGAATGA
AA sequence Show only first row Show all	>Lus10015007 pacid=23152818 polypeptide=Lus10015007 locus=Lus10015007.g ID=Lus10015007.BGIv1.0 annot-version=v1.0 MASSPTTTTTTTFLNSNHTRFRLPFTPHAPNLSLNLSRNRRPLQFRHSSSSLQYFPPIQQSHRRTAATPFAYVTGPASDPNTTDPDPKSSSNEDDDGDEE DTSSSKKLITWRLLSSLLLQHKLRIGISVLALVGCTTCTLSMPIFSGRFFEVLVGVRQEPLWKLLCKVGLAYAMEPILTVMYVVNMNVVWESVMSTLRAQ LFRRVLIQKVEFFDRYKVWFRRTVNSMRGARLLILGVVCILFTLAPQLAPVLGILIFSISVLAVFFGPDNLICFLAIPDWYHCVVAVYKRSTLPVFRSHG ATQASMSDCVTETLSAIRTGRSFSGEQRQMLMFGDQFVGIIAFASVTKKLGRFWHIGVVALGLGCSSLEQRQMLMFGDQVLAYRRSGIRLGMFKSLNESV TRAAVYISLIALYCLGGNKVKAGEISVGTFASFIGYTFTLTFAVQGLVNTSGDLRATLAAVERINSILTGVEVDETLAYGLEKEIQQKEHKNEALKLFAD NGHTRKSSRNLHYMSALKSANDLYNSAWSADICLEDVHFSYPLRPDVNILSGLNLTLKRGTITALVGPSGAGKSTIVQLLARFYEPTKGRITIAGEDIRN FEKTEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHEFIVSLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEAT SALDAVSERLVQQALNHLMKGRTTLVIAHRLSTVQNAHQIAVCSDGRVAELGNHSQLLASKGKYATLVDTQRLAFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10015007 [exp]	0	1
AT3G18500			DNAse I-like superfamily prote...		Lus10014775 [exp]	3.5	0.8758
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	7.3	0.8634
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	8.9	0.8492
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	10.2	0.8542
AT5G59400			unknown protein		Lus10016531 [exp]	12.4	0.8366
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	12.7	0.8383
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	16.6	0.8427
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10021895 [exp]	17.0	0.8127
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10030430 [exp]	18.0	0.7434
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	21.4	0.8244

Compare expression of checked genes

Lus10015007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.