Plant FIBer expression Database

Lus10015008 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62140 209 / 8e-68 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038887
[exp]
191 / 6e-62 AT5G62140 120 / 4e-34 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G134500
[exp]
231 / 8e-77 AT5G62140 196 / 1e-62 unknown protein
PFAM info
Representative CDS sequence
>Lus10015008 pacid=23152804 polypeptide=Lus10015008 locus=Lus10015008.g ID=Lus10015008.BGIv1.0 annot-version=v1.0
ATGGCTTCCAGTTGCAGGATCAACATTTCTCCAAACAAAAAGATTCAGCTCAATTCCACCGTCATCAGAAGAACCACCAGAGTTATTGCTTGCACTTCCA
CCATTTCCACCGCAGTCCCGAGCTCCAATGCTTCTTACAACGTCAGCTTCAAAACTCTATCAGCTTGCAAGCTAGGCATCTCCAGGTACCCGGATTTCGA
CTACAACGCCAGCGGCGGGACAGGAACTGGTACCGCCATCGCCACGAAATCCAGCGAAAACAACATTTCGGTTGAATTCGACCTGGAAACACTCTACATC
CCGCCGTTAACAAGCGAGACGACTCGGTTCCTAGGCCTACCATTGCCACCAGGCCTGAAGATCGACATAGTCCCTGTATCATTCAATGGCAGGATAGCTC
AGGAATCTGGGAAAGTGGAGTTCGAATTCGTTGCGAATTTCTGCTTCACGGTTGGGGGAGGGAGCCTGTACAGAGCTCCACCGCTGCTTGTGAAGACCGT
CCTGACGACCGAAGAGTCGAAAGGGACGATCCGGAGCGGGAAGGGGGAGAGGCTGGATAAAGAAGGGAAATGCAGGCTGGTTGGAGTGGCTGCCGTCGAT
CGGATCGACGACGGGTTTATGAACACTTTCCTTAGTCTGCCGACCGAGTGCCTGGCAGTTCTAAACGCTGTCGTTTCAGTTTCATGA
AA sequence
>Lus10015008 pacid=23152804 polypeptide=Lus10015008 locus=Lus10015008.g ID=Lus10015008.BGIv1.0 annot-version=v1.0
MASSCRINISPNKKIQLNSTVIRRTTRVIACTSTISTAVPSSNASYNVSFKTLSACKLGISRYPDFDYNASGGTGTGTAIATKSSENNISVEFDLETLYI
PPLTSETTRFLGLPLPPGLKIDIVPVSFNGRIAQESGKVEFEFVANFCFTVGGGSLYRAPPLLVKTVLTTEESKGTIRSGKGERLDKEGKCRLVGVAAVD
RIDDGFMNTFLSLPTECLAVLNAVVSVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G62140 unknown protein Lus10015008
[exp]
0 1
AT1G01470 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE... Lus10007905
[exp]
2.6 0.9345
AT4G15248 CO B-box type zinc finger family ... Lus10027151
[exp]
3.5 0.9240
AT2G29380 HAI3 highly ABA-induced PP2C gene 3... Lus10003399
[exp]
4.2 0.9328
AT4G14690 ELIP2 EARLY LIGHT-INDUCIBLE PROTEIN ... Lus10039379
[exp]
4.9 0.9218
AT2G17840 ERD7 EARLY-RESPONSIVE TO DEHYDRATIO... Lus10034499
[exp]
5.1 0.9049
AT5G67020 unknown protein Lus10019344
[exp]
6.2 0.9286
AT3G21360 2-oxoglutarate (2OG) and Fe(II... Lus10025818
[exp]
6.3 0.9221
AT2G17840 ERD7 EARLY-RESPONSIVE TO DEHYDRATIO... Lus10014132
[exp]
6.3 0.9108
AT5G66400 ATDI8, RAB18 RESPONSIVE TO ABA 18, ARABIDOP... Lus10017977
[exp]
8.1 0.8937
AT4G16490 ARM repeat superfamily protein... Lus10010499
[exp]
8.4 0.9065

Lus10015008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.