Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51950 630 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 601 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 576 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 572 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 489 / 2e-167 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G73050 410 / 4e-137 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 346 / 6e-113 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 342 / 1e-111 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038891 [exp] 1062 / 0 AT5G51950 668 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10031663 [exp] 837 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10027406 [exp] 834 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10024487 [exp] 599 / 0 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10017827 [exp] 586 / 0 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10002957 [exp] 564 / 0 AT1G12570 701 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10003176 [exp] 496 / 6e-170 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10037640 [exp] 480 / 1e-163 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015623 [exp] 476 / 5e-156 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111500 [exp] 621 / 0 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 522 / 0 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 482 / 1e-164 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 481 / 2e-164 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 415 / 5e-139 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 355 / 4e-116 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 351 / 3e-114 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 342 / 5e-111 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G249501 [exp] 82 / 2e-18 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10015012 pacid=23152839 polypeptide=Lus10015012 locus=Lus10015012.g ID=Lus10015012.BGIv1.0 annot-version=v1.0 ATGAGACTTCTTGCAGCTCTTCTCGCAGTCAATTTCTTCCTCCATTGCTTCTGCAACTCCGAGAAAGCTCCGTGCTTCTCATTCGTCCAAGAAGCGACGA AGGCGCCGCCGGTGGCGTTCTACGACTACATCATCATCGGCGGTGGTACAGCCGGCTGTCCACTAGCCGCCACCCTGTCCCAACACGCTGCCGTTTTGGT CTTGGAAAGGGGTGGGTCCCCTTACAACAATTCTGACATAACCGACGTGGCTAACTTCGTCAGCACAATAGCTGACGCGTCACCCAGCTCCCCTTTCCAG ACCTTCATCTCCGAGGATGGCGTGTACAACACGCGCGCACGTGTCCTCGGAGGCGGGAGCGCAATTGGCGTCGGGTTTTATTCCCGTGCGGAGGCAAACT ACGTTAGGAGGGCCGGGTTGGACAAGGAGCTGGTTCGGAGATCGTACGAGTGGGTCGAGTGGAAAGTCGGGTTCAAGCCGCAGGTGACACGGTGGCAGAC GACTGTGAGAGAGGGGATGGTGGAGACTGGAGTTGGGCCAGCCAACGGGTTCACCTACGCCCATGACTACGGGACTAAGATCGGTGGGACCACGTTCGAT AGGATGGGCCACAGACATTCGGCCGCCGATTTGCTCGAATACGCCCGACCTAGGAATATCAAGGTCTATTTGCACGCCACCGTAACCAAAATCTTGTTCC GGCGAGTGAGGAGATGGCCAAGGCCAATAGCATACGGAGTCGTATATAAAGACTCAATGGGGAATAGAAAGAAGGCAATCTTGAAGCCTCACCCACACAA CGAAGTGATATTGGCCGCCGGCGCAATCGGAAGCCCACAGCTAATGATGCTTAGTGGGATTGGGCCTGGCCTACATCTAAGGAGCCATGGAATTCAAGTA GTTCTGGATCAACCCTACGTGGGCCACGGAATGGCTGATAACCCAATGAACCTTCTCTACGTCCCTTCGCCTGTCCCCGTCGAGACCTCGCTCGTTCAGG TTGTTGGTATCCCTTACCGCCAGAACTCGTACATCGAGACCGCTAGCGGTTTGAGCTTCGCTTACTCGTGGGCCCAGGGGTTCGCTCGCGACTACGTTTC CTTCTTCAACAAGACGGGGAAGCCATCGTCGCTGACAGCAGAAACAATCACGAGGGCGATCGAGACAGTGCATGCATACGCGAACATGAGCCAAACCACG GGGGGTGTGATACTACAAAAGGTGAAGGGACCTCTGTCATCAGGGGATCTCAAGTTGAGGAGCAAGAGTCCGAACGAGAACCCTTCAGTCTCGTTCAACT ACTACAGGTCTCCACCCGACCTTGAAGGGTGCGTGGAAGGGATGAGGAGCATCATGAGGCTGATAAACTCGCCCTCATTCGCGAAGTTCAGGTACCCACA TTTATCCGCCCAAGCCCTGGTGGACCTGATATTGAACCTTCCTGTGAACTTGAGGCCTAGACACGTGTCGTCGTCCATATCGTTGGAGCAGTTCTGCAAG GATACGGTCATGACAATGTGGGATTACCACGGTGGGTGCCAAGTCGGGAGAGTGGTCGATCCGGAGTACAGAGTCCTCGGGGTGGACAGATTGAGGGTTG TCGATGGCTCCACGTTGCTCCGTTCCCCCGGGACGAATCCTCAAGCCACTGTTATGATGTTAGGAAGATATATGGGGACGAAGATTTTAAGAGAGAGACT TCCATTGTACTTGAGGAGGCCACCGTGGCATATCCCACCAAGGGATTGA
AA sequence Show only first row Show all	>Lus10015012 pacid=23152839 polypeptide=Lus10015012 locus=Lus10015012.g ID=Lus10015012.BGIv1.0 annot-version=v1.0 MRLLAALLAVNFFLHCFCNSEKAPCFSFVQEATKAPPVAFYDYIIIGGGTAGCPLAATLSQHAAVLVLERGGSPYNNSDITDVANFVSTIADASPSSPFQ TFISEDGVYNTRARVLGGGSAIGVGFYSRAEANYVRRAGLDKELVRRSYEWVEWKVGFKPQVTRWQTTVREGMVETGVGPANGFTYAHDYGTKIGGTTFD RMGHRHSAADLLEYARPRNIKVYLHATVTKILFRRVRRWPRPIAYGVVYKDSMGNRKKAILKPHPHNEVILAAGAIGSPQLMMLSGIGPGLHLRSHGIQV VLDQPYVGHGMADNPMNLLYVPSPVPVETSLVQVVGIPYRQNSYIETASGLSFAYSWAQGFARDYVSFFNKTGKPSSLTAETITRAIETVHAYANMSQTT GGVILQKVKGPLSSGDLKLRSKSPNENPSVSFNYYRSPPDLEGCVEGMRSIMRLINSPSFAKFRYPHLSAQALVDLILNLPVNLRPRHVSSSISLEQFCK DTVMTMWDYHGGCQVGRVVDPEYRVLGVDRLRVVDGSTLLRSPGTNPQATVMMLGRYMGTKILRERLPLYLRRPPWHIPPRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	2.2	0.9631
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10025923 [exp]	2.8	0.9479
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	2.8	0.9605
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	3.2	0.9453
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	4.2	0.9566
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Lus10028618 [exp]	5.5	0.8869
AT4G37710			VQ motif-containing protein (....		Lus10011555 [exp]	5.7	0.9392
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	6.5	0.9411
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10011958 [exp]	8.4	0.9268
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	9.2	0.9434

Compare expression of checked genes

Lus10015012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.