Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51920 523 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 372 / 7e-122 unknown protein AT5G66950 253 / 7e-74 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 249 / 3e-72 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 242 / 9e-70 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G16540 84 / 9e-17 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038892 [exp] 1082 / 0 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 399 / 5e-131 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 377 / 3e-122 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 262 / 1e-76 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 261 / 2e-76 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 255 / 3e-74 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 254 / 6e-74 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10031768 [exp] 85 / 1e-16 AT1G16540 1021 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Lus10022447 [exp] 76 / 1e-14 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G137900 [exp] 721 / 0 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 582 / 0 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 565 / 0 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 262 / 1e-76 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G036100 [exp] 261 / 3e-76 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G172100 [exp] 77 / 4e-15 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 77 / 7e-15 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 76 / 1e-14 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G066400 [exp] 74 / 2e-13 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.001G056400 [exp] 46 / 1e-05 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10015013 pacid=23152789 polypeptide=Lus10015013 locus=Lus10015013.g ID=Lus10015013.BGIv1.0 annot-version=v1.0 ATGCAGTCACCTTGTCTCAATGAGTACTTTGAGTCATGCCTCCTCCAAGGCTGCTGCCCTGCCCTCCACCCCGAACCCCTCAACTCGACCGAGAAAACCT CGAAACCCACGACCATGTCCACCACTCGTCGCAACTTCGCCACGTCAGCAACCGCCTCCTCGTCAAACTTCTCCACAACCAACTACACAAACCCTGACTC CTTACCTTCCTTACACCACTCCTTCATGGAGTTCACCAAGTCCTACCCGCAGTACTCGTCGACCTACTCGGTTGACGAGATTCGAACCCGCGACTACCAG AACCTCTCACAGCATCAATCCAACCACACCTGCCTTGACTACATAGGGATAGGTTTGTTCTCATGCTCACAAATTCAGCAGTCTGTTGACCAGTCAACGG GCCAGTTTGTATCGGATGTTCCCTTTTTCACAGTCTGCTACAAAGCTGGCAACTTGAAGACTCAGCTCCTCCATGGCGGCCAGGAATCGGAGCTCGAATC CGCAATGAGGAAAAGGGTCATGAAGTTCATGAACATATCAGGTAAGGATTACAGCTTGGTGTTCACAGCCAACAGAACTTCTGCTTTCAAACTGTTGGCA GAATCCTACCCTTTCGGATCGAAATCCTCGAAAGTTCTGAGTGTTTACGACTACGAAAGCGAGGCAGTCGAAGCCATGAACAGAATCTCGGAGCGAAAAG GAGGTAAAGTCATGTCAGCTGAGTTCTCATGGCCTAGGCTGAGGATCAACTCATCCAAGCTGAAGAAAATGATTGTTTCGAAAAAGAAGCACAAGAAAAA GAGAGGGGTTTTTGTGTTTCCCCTTCATTCAAGGATGACTGGAGCTAGATATCCATATTCATGGATGAAGAAAGCTCAAGAGAATGAGTGGCACTTACTT ATAGATGCATGTGCTTTAGGTCCTAAAGACATGGACAGCTTCGCACTCGCGTTGATCCGACCGGACTTCATCATCTCGTCGTTCTACAAGATCTTCGGGG AGAATCCTTCCGGATTCGGGTGTCTTTTCGTTAAGAAATCGACCATCCCGGTTCTCGAGGACTACTCGGGTGCTGGCATGGTCAGCCTTCTTCCAGGAAA GATTGCTGATCATGATGATGATGATAAAGTTCAAGACTTTATGTCTAGGATGCAGTTGGGTGAGGTTGATGAAGAAGATTTGGACACTTCGAATTCCTTC TCCGGTCCAATTAATGCTCCGAAATCGGGGAAGATGAAAGAAGCTAGAGCTACAAGCATTGTTGATAGTAACCAGCAGATGAAGTTGAAAGTTGAATGCA GGGGATTGGATCAGGTGGATGCGTTGGGGCTAACAGAGATTACAAACAGAGGGAGGTGTTTAATCAACTGGCTGGTGAATTCGTTGACGAAGCTGAAGCA TCCGACGAGTTCGAAGGAGATTCCGTTGGTGAGAATCTATGGTCCGAAAGTGAAGTTCGACAGAGGACCTGCATTGGCATTCAATGTGTTTGATTGGAAA GGGGAAAAGATTGAGCCTTTGATGGTGCAGAAGCTAGCTGACCGGAATAGTATTTCGCTCAGCTATGGCTTCCTGCACCATATATCGTTTTCGGACAAGT ATGAAGCTGATAAGGCAGAAGTTCTGGAACTGAGAGGAGGGAGTGAGGGTTTGAGTAAGAAGAAGAAGGAGAAAGGGAAGGTGGGGATCACGGTTGTGAC GATCGCATTAGGGTTCTTGTCGAATTTCGAGGACGTGTACAGGTTGTGGGGGTTTGTAGCTCAGTTCTTGGATGCTGATTTTGTTGAGAAGGCTAACTGG AGGTATACTGGTTTGAACCAGAAGACAGTTGAGGTGTAA
AA sequence Show only first row Show all	>Lus10015013 pacid=23152789 polypeptide=Lus10015013 locus=Lus10015013.g ID=Lus10015013.BGIv1.0 annot-version=v1.0 MQSPCLNEYFESCLLQGCCPALHPEPLNSTEKTSKPTTMSTTRRNFATSATASSSNFSTTNYTNPDSLPSLHHSFMEFTKSYPQYSSTYSVDEIRTRDYQ NLSQHQSNHTCLDYIGIGLFSCSQIQQSVDQSTGQFVSDVPFFTVCYKAGNLKTQLLHGGQESELESAMRKRVMKFMNISGKDYSLVFTANRTSAFKLLA ESYPFGSKSSKVLSVYDYESEAVEAMNRISERKGGKVMSAEFSWPRLRINSSKLKKMIVSKKKHKKKRGVFVFPLHSRMTGARYPYSWMKKAQENEWHLL IDACALGPKDMDSFALALIRPDFIISSFYKIFGENPSGFGCLFVKKSTIPVLEDYSGAGMVSLLPGKIADHDDDDKVQDFMSRMQLGEVDEEDLDTSNSF SGPINAPKSGKMKEARATSIVDSNQQMKLKVECRGLDQVDALGLTEITNRGRCLINWLVNSLTKLKHPTSSKEIPLVRIYGPKVKFDRGPALAFNVFDWK GEKIEPLMVQKLADRNSISLSYGFLHHISFSDKYEADKAEVLELRGGSEGLSKKKKEKGKVGITVVTIALGFLSNFEDVYRLWGFVAQFLDADFVEKANW RYTGLNQKTVEV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10015013 [exp]	0	1
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Lus10004896 [exp]	4.9	0.8301
AT3G13980			unknown protein		Lus10037659 [exp]	5.7	0.7967
AT3G59680			unknown protein		Lus10025594 [exp]	7.4	0.7930
AT5G52430			hydroxyproline-rich glycoprote...		Lus10028779 [exp]	8.5	0.7846
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	8.8	0.7913
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10025995 [exp]	12.8	0.8009
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	14.1	0.8030
					Lus10010435 [exp]	24.0	0.7859
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	25.5	0.7872
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	31.1	0.7611

Compare expression of checked genes

Lus10015013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.