Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25420 476 / 5e-169 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 474 / 4e-168 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT5G07200 471 / 4e-167 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G60980 451 / 3e-159 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT1G44090 322 / 3e-108 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT5G05600 174 / 5e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 173 / 3e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G24530 168 / 7e-49 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 160 / 7e-46 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15550 160 / 8e-46 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006722 [exp] 592 / 0 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10006350 [exp] 584 / 0 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027399 [exp] 577 / 0 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 570 / 0 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10038894 [exp] 498 / 2e-177 AT5G51810 354 / 7e-121 gibberellin 20 oxidase 2 (.1) Lus10041390 [exp] 453 / 8e-160 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10036539 [exp] 449 / 4e-158 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10015573 [exp] 176 / 6e-52 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 175 / 1e-51 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134600 [exp] 526 / 0 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.012G132400 [exp] 511 / 0 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.002G151300 [exp] 491 / 3e-175 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G073700 [exp] 468 / 2e-165 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G103800 [exp] 370 / 4e-127 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 358 / 4e-123 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 358 / 2e-122 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 353 / 1e-120 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.012G006300 [exp] 188 / 1e-56 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 175 / 9e-52 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10015016 pacid=23152734 polypeptide=Lus10015016 locus=Lus10015016.g ID=Lus10015016.BGIv1.0 annot-version=v1.0 ATGGCGGTGGACACAGTACAATCACCACCTCCTACGAAACCCAACTCCTTAATCTTCGACGCCAAACTCCTCAACAACGAACCCTCATCCAACATTCCCC AGCAGTTCATCTGGCCCGATCACGAGCGGCCTCGAGCCCATGCTCCGGAGCTCCAAGTCCCCGTGATCGACCTCGCCGGCGGATGCGCCGCCGCCGCGAA ACTCGCCGGAGATGCGTGCAGGAAGCACGGGTTCTTCCTTGTTGTTAACCATGGTGTGGATAGGCGTCTGCTCTCTGACGCGCATGACTATATGGATAGC TTCTTCGGGTTGCCGCTTTCGGAGAAGCAGAAGGCGCAGAGGAAGCTCGGCGAGAGCGCCGGCTACGCTAGTAGCTTCACCGGCAGATTCTCGTCCAAGC TCCCATGGAAGGAAACGCTGTCGCTTCGATTCAATGCTGCCCAAAGTTCGCCTAAGATCGTCAGGGACTATCTCGTCAGCACAATGGGTCGAGATTTCTC CAATTTCGGGAATGTGTACCAGGAGTACTGCGAATCGATGAACAAGCTGTCGCTGAGGATCATGGAGCTACTGGGGATGAGCTTGGGGCTGAAGAACAGG GGATATTTCAGGGAATTTTTCGAGGAGAACGATTCGATAATGAGGCTGAACTATTACCCACCGTGCCAGAAACCTGATGCTACGTTAGGAACGGGACCTC ATTGCGATCCAACGTCGTTGACGATCCTGCACCAGGATCAAGTTGCCGGGTTGCAAGTGTTTGTGGACAACGAGTGGCGCTCTATCAACCCCAATGCCGA CGCCTTTGTCGTCAACATTGGTGACACTTTCATGGCACTGTCGAACGGACAATTCAAGAGCTGCCTGCATAGGGCGGTGGTGAACAAGACGACGACGAGG AAGTCGTTGGCGTTTTTCTTGTGTCCGAAGAGCGACAAGGTAGTGGCGCCTCCGGAGGAGCTATTAAACGAGAGCAATCCAAGGGTGTACCCGGATTTTA CATGGCCGACATTCCTGGAGTTTACCCAAAAGCACTATCGAGCCGACATGAACACCTTGGAGGCCTTCAAGATTTGGCTTCATGATCAACAAACCAACTT AAAGTAA
AA sequence Show only first row Show all	>Lus10015016 pacid=23152734 polypeptide=Lus10015016 locus=Lus10015016.g ID=Lus10015016.BGIv1.0 annot-version=v1.0 MAVDTVQSPPPTKPNSLIFDAKLLNNEPSSNIPQQFIWPDHERPRAHAPELQVPVIDLAGGCAAAAKLAGDACRKHGFFLVVNHGVDRRLLSDAHDYMDS FFGLPLSEKQKAQRKLGESAGYASSFTGRFSSKLPWKETLSLRFNAAQSSPKIVRDYLVSTMGRDFSNFGNVYQEYCESMNKLSLRIMELLGMSLGLKNR GYFREFFEENDSIMRLNYYPPCQKPDATLGTGPHCDPTSLTILHQDQVAGLQVFVDNEWRSINPNADAFVVNIGDTFMALSNGQFKSCLHRAVVNKTTTR KSLAFFLCPKSDKVVAPPEELLNESNPRVYPDFTWPTFLEFTQKHYRADMNTLEAFKIWLHDQQTNLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10015016 [exp]	0	1
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10011322 [exp]	1.0	0.8927
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042744 [exp]	2.4	0.8684
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	2.8	0.8695
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10038894 [exp]	3.5	0.8101
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10029708 [exp]	4.9	0.8192
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	7.2	0.8682
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	7.4	0.8554
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Lus10041965 [exp]	9.2	0.7805
AT5G22090			Protein of unknown function (D...		Lus10004098 [exp]	15.0	0.8159
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	20.8	0.8281

Compare expression of checked genes

Lus10015016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.