Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45510 578 / 0 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G44890 546 / 0 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT1G69500 397 / 6e-133 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT5G23190 340 / 4e-110 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT3G56630 336 / 2e-109 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT5G08250 331 / 1e-107 Cytochrome P450 superfamily protein (.1) AT1G34540 326 / 2e-105 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT2G45970 316 / 5e-101 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G01600 316 / 8e-101 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT1G63710 310 / 3e-99 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038896 [exp] 966 / 0 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10009232 [exp] 562 / 0 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037999 [exp] 556 / 0 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037157 [exp] 416 / 6e-140 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10036772 [exp] 415 / 2e-139 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 337 / 3e-109 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 336 / 2e-108 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10032278 [exp] 329 / 1e-105 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10040986 [exp] 328 / 2e-105 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131200 [exp] 668 / 0 AT2G44890 511 / 7e-178 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) Potri.014G072000 [exp] 607 / 0 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072100 [exp] 583 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072300 [exp] 573 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.008G088900 [exp] 400 / 1e-133 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.016G031700 [exp] 352 / 2e-115 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 340 / 1e-110 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.007G072100 [exp] 327 / 3e-105 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 323 / 2e-103 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.014G085800 [exp] 322 / 3e-103 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10015018 pacid=23152828 polypeptide=Lus10015018 locus=Lus10015018.g ID=Lus10015018.BGIv1.0 annot-version=v1.0 ATGAATCCTCCAGCTGTTATTGTTCTAACGTTCTACTTTCATGAATTGACTTCTGCAACGTCTGATGCAGAACAGGACAAGAAGAATAAGGACACATATA TAACCCATGAGGTTCTTGTTGTGGCCTCTGTGGTGTTCTTGCTCGTTCTGGGTTATATTCATCCAACTCTGGTAATAGTTCTTCTTAGTTTGTTGATCTT CGTTGCTGTAGCGTTTGCAGCAAAGTATCTATTGTTCTACATCAAGGAATCTGTGACGAGTAGTCATCAGAGGCGGCCTCCGATCGCCGGTCCGATTTTT GTGCAGCTCATCCACTTCGATTCGCTCTTCGACTACCAGACATCTCTAGCTAAGAAACACAAGACTTACCGCCTCCTCACTCCGTCTCACAGTGAAGTTT ATACGGTGGATCCTGCTAATGTTGAATACATACTGAAAACCAACTTCTCCAACTATGGAAAGGGGTCTTATAATCTTGGAATTATGAACGATCTCTTTGG GGATGGTATTTTTGCCACTGATGGTGATAAATGGCGCCACCAGAGGAAGCTAGCTAGCCATGAATTCTCAACTAAAGTTCTCAGGGACTTCAGCTCTAAC GTTTTCCGGGCCAACTCTGCGAAGTTGGCTTCGAAGATCGGTGTTGCTGCAGCAGTTACACAGGCCATAGATTTGCAGGATATGCTGATGAAATCAACCC TAGACACGATGTTCAAGGTGGGATTCGGGATGGATCTCAACTCTTTATCCGGATCAGATAACTTCGACCAGCAATTCGCCAGAGCATTTGACGAGGCCAA CGCCATCACATTCCGAAGGTTTGTCGATTTGATATGGAAGCTCAAGAAGGTCTTCAACATTGGCCTGGAAGTCCGTCTTAAGCAGAGCATGAAAACCATT GATGCGTTCATATACCAGGTGATTCAGCTCAAGAGGGAACAGATGATGAAAATTGGAGAAGACATTCATGTTGAGAAGAAAGACATACTATCAAGGTTCC TGCTGGAAAGCAAGAAAGACCCAGAAAACATGACCGACAAGTATCTGAGAGACATATCTCTAAACTTCATCATAGCTGGGAAAGACACGACTGCAAACTC ACTCACTTGGTTCTTCTACTTGCTCTGCAAGCACCCTCTGGTGCAAGAAAAGGTTGCTTGGGAAGTAAAGGAATCAACAAAAACATCAGTAGGTGAAGTG TCGGCTGATGAATTCGTCGAGCTCCTGACTCAGGAATCCCTGGACAAGATGCACTACCTTCATGCAGCTCTAACAGAGACTCTCAGGCTGCACCCTGCCG TTCCTGTGGATGGGAAGAGCGCTGAAGAAGATGACGTTCTTCCGGATGGGTACAGAGTGAGAAAGGGGGACGGTGTCACCTACATGGCTTACGCTATGGG AAGGATGGCTTCCATTTGGGGAGACGACGCGGAGGAGTTCCGACCAGAGAGATGGCTCGACGAGTATGGCGTGTTCAAGCTGGAAAGCCCCTTCAAGTTC ACTACATTTCACGCGGGGCCGCGGATTTGCTTGGGGAAGGAGTTTGCATACAGGCAAATGAAGATCTTCGCAGCAACATTACTCTACTTGTTCAAGTTCA AGCTTGTGGACGAGAGGAAAGTAGCGACTTACCAGCTCATGTTCACTCTTCACATGGATGGTGGCCTCCATTTGCTTGCACTTCCTAGGCCCTAA
AA sequence Show only first row Show all	>Lus10015018 pacid=23152828 polypeptide=Lus10015018 locus=Lus10015018.g ID=Lus10015018.BGIv1.0 annot-version=v1.0 MNPPAVIVLTFYFHELTSATSDAEQDKKNKDTYITHEVLVVASVVFLLVLGYIHPTLVIVLLSLLIFVAVAFAAKYLLFYIKESVTSSHQRRPPIAGPIF VQLIHFDSLFDYQTSLAKKHKTYRLLTPSHSEVYTVDPANVEYILKTNFSNYGKGSYNLGIMNDLFGDGIFATDGDKWRHQRKLASHEFSTKVLRDFSSN VFRANSAKLASKIGVAAAVTQAIDLQDMLMKSTLDTMFKVGFGMDLNSLSGSDNFDQQFARAFDEANAITFRRFVDLIWKLKKVFNIGLEVRLKQSMKTI DAFIYQVIQLKREQMMKIGEDIHVEKKDILSRFLLESKKDPENMTDKYLRDISLNFIIAGKDTTANSLTWFFYLLCKHPLVQEKVAWEVKESTKTSVGEV SADEFVELLTQESLDKMHYLHAALTETLRLHPAVPVDGKSAEEDDVLPDGYRVRKGDGVTYMAYAMGRMASIWGDDAEEFRPERWLDEYGVFKLESPFKF TTFHAGPRICLGKEFAYRQMKIFAATLLYLFKFKLVDERKVATYQLMFTLHMDGGLHLLALPRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	1.0	0.9779
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	3.0	0.9654
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	4.6	0.9720
AT5G41810			unknown protein		Lus10003901 [exp]	6.6	0.9727
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	7.5	0.9682
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10033852 [exp]	8.0	0.9474
AT4G18220			Drug/metabolite transporter su...		Lus10043396 [exp]	8.2	0.9467
AT3G47570			Leucine-rich repeat protein ki...		Lus10033329 [exp]	8.2	0.9558
AT3G47570			Leucine-rich repeat protein ki...		Lus10033330 [exp]	8.4	0.9549
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	8.8	0.9682

Compare expression of checked genes

Lus10015018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.