Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51740 492 / 7e-173 Peptidase family M48 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038897 [exp] 828 / 0 AT5G51740 501 / 1e-176 Peptidase family M48 family protein (.1) Lus10031682 [exp] 100 / 2e-25 AT5G51740 107 / 4e-29 Peptidase family M48 family protein (.1) Lus10032437 [exp] 87 / 4e-21 AT5G51740 81 / 1e-19 Peptidase family M48 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131100 [exp] 542 / 0 AT5G51740 565 / 0.0 Peptidase family M48 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01435 [flax] [poplar] Peptidase_M48 Peptidase family M48
Representative CDS sequence Show only first row Show all	>Lus10015019 pacid=23152761 polypeptide=Lus10015019 locus=Lus10015019.g ID=Lus10015019.BGIv1.0 annot-version=v1.0 ATGGCGGCTTACAGGCGAGCTAAGCTCGCCATCGACGCTTTCCGCAGTTTCTCTTCTCACAGTTCTTCGATTCGAGATTCAGCTTCGAGAATCCGCGCCA TGACGATCATTTCTCCCGATCCAGCTAAGTCCTCCACCTCATCCGTTTCTCAGAGGTTTGGTTTATGTTTACTAGGCTCGAGATGTCAGTACGCAGTCGT GAATGGTAAAAGAGTCGTGGTTCCAAACTCGGCTCCGTTCGCCGGTGGCTGCGGCGGAGGAGGAGGATTTAAGCGGTTCTATTACGTGGATAACCGCCGC GTACAGCACTTCAAGCCCCGGGGATTCCGGCGGTGGCTTCAGAACCCTAGGAACGTGATGACTGTTGTTCTGCTCGGTTCTGGAGTTGTAATCACGGTCT ACTTGGGGAATCTGGAGACGGTTCCTTACACGAAGAGGAAGCACTTCGTGCTGTTGAGCAGCACGATGGAGAGGAGCATGGGAGAGGCTCAGTTTCAGAA GTTGAAAGAGTCGTTCAAAGGTCAAATCCTGCCTGCGATTCACCCTGATAGTATTAAGATTCGTGTGATTGCCAAGGACATCATTGAGGCCTTGCAACGT GGGGTGAGGAATGAGCAAGTGTGGACTGATCTGAGCTATTCCTCGGACGAGGTTGATTCGACGAATAAGGGAGGAGGTGGTGCTGGTGAGATGCACAAGA TGTTGAGTGAGGATGAAGCGAAGGTGGAGCCGAATTGGAGTGGAAAAGATGAAGTTCTTGATGATAAGTGGATGGAACAAACTAGGAAATCAGGGAGGAA AGCCGAAACTTCGCATTTGGACGGGCTTAACTGGGAGGTTATTGTTGTTAATAAGGATGTTTTGAATGCCTTTTGTGCACCAGGTGGGAAGATAGTCGTG TTCACTGGTTTGTTCGAGCATTTCAAGACTGATGCTGAGATTGCTACCATTCTTGCTCACGAGATCGGGCATGCTGTGGCTCGACATTCAGCTGAGAAGT TGACTAAGAATGTATGGTTCACCATTCTACAAGTCTTCCTTTTCCAGTTCATAACACCTGATGTCGTCCAGACAATGTCCACTCTGTTCTTAAGTCTTCC ATTCGATCGAAAGATGGAAATAGAAGCTGATTACATAGGTCTGCTGCTGATGGCTTCTGCGGGATATGATCCTCGAGTCGCACCAACTGTATACGAGAAA CTGGGGAAGATATCTGGGGAATCCGCGTTGAGAAACTATCTCTCCACGCATCCGTCCGGGAAGAAAAGGTCTAGCTTGCTTGCTCAAGCTCGTGTCATGG ACGAAGCACTAACCATCTACAGGGAATCACTGTCCGGACGTGGAATTGAAGGCTTCTTCCTGTAA
AA sequence Show only first row Show all	>Lus10015019 pacid=23152761 polypeptide=Lus10015019 locus=Lus10015019.g ID=Lus10015019.BGIv1.0 annot-version=v1.0 MAAYRRAKLAIDAFRSFSSHSSSIRDSASRIRAMTIISPDPAKSSTSSVSQRFGLCLLGSRCQYAVVNGKRVVVPNSAPFAGGCGGGGGFKRFYYVDNRR VQHFKPRGFRRWLQNPRNVMTVVLLGSGVVITVYLGNLETVPYTKRKHFVLLSSTMERSMGEAQFQKLKESFKGQILPAIHPDSIKIRVIAKDIIEALQR GVRNEQVWTDLSYSSDEVDSTNKGGGGAGEMHKMLSEDEAKVEPNWSGKDEVLDDKWMEQTRKSGRKAETSHLDGLNWEVIVVNKDVLNAFCAPGGKIVV FTGLFEHFKTDAEIATILAHEIGHAVARHSAEKLTKNVWFTILQVFLFQFITPDVVQTMSTLFLSLPFDRKMEIEADYIGLLLMASAGYDPRVAPTVYEK LGKISGESALRNYLSTHPSGKKRSSLLAQARVMDEALTIYRESLSGRGIEGFFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	0	1
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	2.6	0.8080
AT5G10780			unknown protein		Lus10023585 [exp]	3.2	0.8063
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030140 [exp]	6.7	0.7661
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10006515 [exp]	8.1	0.7999
AT4G21110			G10 family protein (.1)		Lus10023881 [exp]	8.7	0.7141
AT5G51740			Peptidase family M48 family pr...		Lus10038897 [exp]	10.2	0.7844
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	10.7	0.7818
AT3G05000			Transport protein particle (TR...		Lus10004135 [exp]	12.6	0.7374
AT5G59830			unknown protein		Lus10040857 [exp]	16.0	0.7193
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10028645 [exp]	20.8	0.7694

Compare expression of checked genes

Lus10015019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.