Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62190 84 / 2e-19 PRH75 DEAD box RNA helicase (PRH75) (.1) AT3G22310 48 / 1e-06 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT3G22330 47 / 3e-06 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT5G26742 44 / 3e-05 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015020 [exp] 186 / 1e-55 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10038898 [exp] 171 / 5e-50 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10027388 [exp] 105 / 1e-26 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031683 [exp] 101 / 4e-25 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031012 [exp] 46 / 4e-06 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10035410 [exp] 44 / 2e-05 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 44 / 4e-05 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 44 / 4e-05 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10001057 [exp] 40 / 0.0004 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131000 [exp] 105 / 1e-26 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.015G133400 [exp] 86 / 5e-20 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.005G000100 [exp] 44 / 2e-05 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000500 [exp] 44 / 3e-05 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.016G023100 [exp] 40 / 0.0007 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.006G024100 [exp] 39 / 0.001 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015021 pacid=23152741 polypeptide=Lus10015021 locus=Lus10015021.g ID=Lus10015021.BGIv1.0 annot-version=v1.0 ATGCCTTCGATTGCTCTGGCTAACGATTCCATGGAGGTCAGTAACAAGAAGGAGAAGAAGATGAAGAAGCTCGCTCTCGAAGTGATGGAGACCGACACTG AGCCGAAGAGCAAGAAGAAGGAGAAGAAGAGCAAGAGGAAGGCTGTGGAGATCGAGAGTGGAGATGACGAGGTGAAGAGCGAGACTAGCTCTGAGCTAGG GGAGCCGGTGAATTCGAAGTCGGAGAAGAAGGCGAAGAAGGCTAAGGTTGATGAAGTTGAGGAGGAAGAGGAAGTTGTGGTGAAGGCTGATGATCCTAAT GCTGTGGATAAATTCAGGATATCGGAGCCGCTGAAGCAGAAGCTTAAGTCCAGGGGGATTGAGGCTTTGTTTCCGATTCAGGCGATGACGTTCACTGATA TCCTCGATGGTTGCGATTTGGTCGGCCGAGCTCGCACTGGACAGGTGACATATCGATTTCCTGTTGTCCATTTTGTAAATTTGTGCTTTGGTATGCTTGC GTTGCATTGTCATTAA
AA sequence Show only first row Show all	>Lus10015021 pacid=23152741 polypeptide=Lus10015021 locus=Lus10015021.g ID=Lus10015021.BGIv1.0 annot-version=v1.0 MPSIALANDSMEVSNKKEKKMKKLALEVMETDTEPKSKKKEKKSKRKAVEIESGDDEVKSETSSELGEPVNSKSEKKAKKAKVDEVEEEEEVVVKADDPN AVDKFRISEPLKQKLKSRGIEALFPIQAMTFTDILDGCDLVGRARTGQVTYRFPVVHFVNLCFGMLALHCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10015021 [exp]	0	1
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	3.5	0.8259
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	9.7	0.8087
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	14.3	0.7790
AT1G02870			unknown protein		Lus10002436 [exp]	20.6	0.7665
AT2G29200		APUM1	pumilio 1 (.1)		Lus10001567 [exp]	23.1	0.7406
AT4G10620			P-loop containing nucleoside t...		Lus10016692 [exp]	25.2	0.7410
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	26.8	0.7683
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10032381 [exp]	32.0	0.7487
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10035018 [exp]	33.6	0.7703
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	33.7	0.7666

Compare expression of checked genes

Lus10015021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.