Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62220 600 / 0 ATGT18 glycosyltransferase 18 (.1) AT2G20370 333 / 7e-108 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT4G13990 327 / 2e-106 Exostosin family protein (.1) AT2G29040 327 / 3e-104 Exostosin family protein (.1) AT1G63450 322 / 9e-103 RHS8 root hair specific 8 (.1) AT2G32750 310 / 4e-100 Exostosin family protein (.1) AT2G32740 301 / 2e-97 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT5G41250 304 / 3e-97 Exostosin family protein (.1) AT2G31990 296 / 7e-95 Exostosin family protein (.1) AT1G68470 295 / 7e-95 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031685 [exp] 687 / 0 AT5G62220 622 / 0.0 glycosyltransferase 18 (.1) Lus10027386 [exp] 682 / 0 AT5G62220 621 / 0.0 glycosyltransferase 18 (.1) Lus10016532 [exp] 352 / 6e-116 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 341 / 4e-111 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 338 / 6e-110 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10006694 [exp] 329 / 7e-107 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10022862 [exp] 330 / 2e-106 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10024961 [exp] 326 / 6e-105 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10010677 [exp] 308 / 3e-99 AT2G32750 497 / 7e-173 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130700 [exp] 629 / 0 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 629 / 0 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.009G032500 [exp] 335 / 5e-108 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 329 / 3e-107 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 330 / 6e-107 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.014G147800 [exp] 324 / 7e-105 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G382200 [exp] 302 / 3e-97 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 301 / 5e-97 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 298 / 1e-94 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.001G120800 [exp] 250 / 1e-77 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10015022 pacid=23152775 polypeptide=Lus10015022 locus=Lus10015022.g ID=Lus10015022.BGIv1.0 annot-version=v1.0 ATGCTTTCACTCGATCATCCCCCTCCACCAGGTGAACCCAAAAGGTACAAACTCTCTACTGCCGCCGCCGACATCTTCATCCGCCGGAAGAACTCCTTCC GGTCGTTAACATCTCTAGTCACCCACGCCTACTTATCTAAACCCCGGTCATGGATCTTCCTCCTCGTCCTCTTCATCCAGATTCTCCTCTTCCTCACCCT CCGCTCTTTCCCCTTCCCCTCCACCCACTCTCCGCCGCCTTCCTCCGCCGCCGTCGATCATAACCACCACCGCCACCACTGCGACCACGGCCATGTTTAC GTGTACGACCTGCCACCGAGCTTAAACACCGACCTGATAAAAAACTGTGAGAAGCTAAACCCATGGAGCTCGAGCTGCGAATCTCTAGCCAACGACGGAT TCGGCCAACAAGCCACCAGACTTTCATCCATAATCCCGCTGGAATTAGCTCCGGCGTGGTTCTGGACTGATCAATTCGTCTCCGAGATCGTATTCCACAA CAGAATGATGAATCACAAATGCAGAACAACCAATCCCAACAATGCGACGGCGTTTTACATCCCGTTCTACGCCGGATTAGCAGTGGGCAGATTCCTCTGG CAGAATTTCTCCGCTAAAGATCGTGATCGTCACTGCGAGGCGATGCTTGAATGGATCGGATCTCAACCACAGTTTAAAAAATTAAACGGCTGGGATCACT TCCTTACAATGGGCCGCATCACATGGGATTTCCGCCGCTCCCGCGATCAGGACTGGGGCTCGAGCTGTATGTACCTCCCAAGGATGAGAAACGTCACGCG CCTCCTCATCGAGCGGAACCCGTGGGACTACTTCGATGTCGGTGTACCTTACCCTACAGGATTCCACCCCAGATCAGACTCCGACGTCGTTTCATGGCAG GACTTCGTTCGGAAACGGCACCGTTCGTCCCTCTTCTCCTTCGTCGGAGCTGCTCGGAAGTCGTTCAAAAACGACTTCCGAGGTTTATTACTCAACCACT GCCGCAACGAATCGGACGCGTGTCGGGTCGTGGACTGCTCGATCCGGTCAAGCTGCGGAAACGGGTCGACGGCGATTATGGAGGCGTTTCTCGATTCGGA TTTCTGCCTACAGCCGAGAGGGGACAGCTTCACGAGGAGGTCGATCTTTGATTGTATGGTAGCGGGGTCGATTCCAGTGGTTTTCTGGAGGAGGACGGCG TATTACCAGTACGAGTGGTTCTTACCGGGCGAACCGAAGAGCTACTCGGTTTTTATCCATAGGGATGGGGTGAAGAACGGGACGGTTTCGATTCGGAAGG TGCTGGAGGGTTATGGGAGAGATGAGGTGAGGAGGATGAGGGAGAAGGTGATTGAGTTGATTCCGAGGATTGTTTACGCGAGGAATAGTGATGGGTTGGA GACGGTAAAGGATGCGTTCGACGTCGCTGTCGACGGTGTTCTGAGGCGGTTTGAAGAACAGAGGGAGTGGGGGTATAAGTGGTGA
AA sequence Show only first row Show all	>Lus10015022 pacid=23152775 polypeptide=Lus10015022 locus=Lus10015022.g ID=Lus10015022.BGIv1.0 annot-version=v1.0 MLSLDHPPPPGEPKRYKLSTAAADIFIRRKNSFRSLTSLVTHAYLSKPRSWIFLLVLFIQILLFLTLRSFPFPSTHSPPPSSAAVDHNHHRHHCDHGHVY VYDLPPSLNTDLIKNCEKLNPWSSSCESLANDGFGQQATRLSSIIPLELAPAWFWTDQFVSEIVFHNRMMNHKCRTTNPNNATAFYIPFYAGLAVGRFLW QNFSAKDRDRHCEAMLEWIGSQPQFKKLNGWDHFLTMGRITWDFRRSRDQDWGSSCMYLPRMRNVTRLLIERNPWDYFDVGVPYPTGFHPRSDSDVVSWQ DFVRKRHRSSLFSFVGAARKSFKNDFRGLLLNHCRNESDACRVVDCSIRSSCGNGSTAIMEAFLDSDFCLQPRGDSFTRRSIFDCMVAGSIPVVFWRRTA YYQYEWFLPGEPKSYSVFIHRDGVKNGTVSIRKVLEGYGRDEVRRMREKVIELIPRIVYARNSDGLETVKDAFDVAVDGVLRRFEEQREWGYKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10015022 [exp]	0	1
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10027548 [exp]	6.5	0.7646
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	10.1	0.8056
AT4G31330			Protein of unknown function, D...		Lus10020172 [exp]	25.0	0.7489
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10029634 [exp]	32.7	0.7380
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016464 [exp]	33.3	0.7240
AT2G19580		TET2	tetraspanin2 (.1)		Lus10040551 [exp]	49.9	0.7370
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10041823 [exp]	51.7	0.7268
AT2G18030			Peptide methionine sulfoxide r...		Lus10041922 [exp]	51.8	0.7298
AT4G39840			unknown protein		Lus10024058 [exp]	52.8	0.7083
AT2G37730			Protein of unknown function (D...		Lus10024364 [exp]	101.7	0.6664

Compare expression of checked genes

Lus10015022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.