Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51690 691 / 0 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT1G62960 573 / 0 ACS10 ACC synthase 10 (.1) AT4G37770 411 / 9e-140 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT3G49700 409 / 7e-139 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT4G26200 400 / 7e-136 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT5G65800 400 / 4e-135 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT2G22810 394 / 4e-133 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT4G08040 390 / 1e-131 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT3G61510 373 / 2e-124 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT4G11280 372 / 3e-124 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038899 [exp] 966 / 0 AT5G51690 702 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10006676 [exp] 587 / 0 AT1G62960 620 / 0.0 ACC synthase 10 (.1) Lus10007021 [exp] 582 / 0 AT1G62960 612 / 0.0 ACC synthase 10 (.1) Lus10008579 [exp] 402 / 2e-136 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10032695 [exp] 400 / 1e-135 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10007223 [exp] 399 / 6e-135 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10039647 [exp] 398 / 6e-134 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10011565 [exp] 390 / 3e-131 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007910 [exp] 386 / 3e-129 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132100 [exp] 741 / 0 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.003G117700 [exp] 640 / 0 AT1G62960 664 / 0.0 ACC synthase 10 (.1) Potri.018G067000 [exp] 429 / 7e-147 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.006G149600 [exp] 426 / 7e-146 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.002G113900 [exp] 405 / 2e-137 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.014G012600 [exp] 402 / 3e-136 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 401 / 7e-136 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G163700 [exp] 396 / 1e-133 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.001G099400 [exp] 395 / 4e-133 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G132300 [exp] 384 / 6e-129 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10015023 pacid=23152834 polypeptide=Lus10015023 locus=Lus10015023.g ID=Lus10015023.BGIv1.0 annot-version=v1.0 ATGAGGCTCGTCGTACCTCTGCAAGGCGTCGTCCACGGAAGAGGAGGCCTAATCTTAGGCTCACTAATCCCTTGCGCTCTATTCTACTTCTTCCAGCTCT ACCTCAAGCGCCACCGCTCTCCTCCCACGGATCCTCCTCCTCCTTCTTCCTCGTCGAACCCGACATCGCCGTCCGCTTCGTCTCTCAACCTCGTCGATCT CCCCCGGAGTGCCTCCCGCTCCAATCTGCTCAGCCGCGGGTCGTTTGGCTCCGTCCGGTTGTCGTCTCGAGGGATGGCGATAGCGAAACCGAGCGAGTCC CCGTACTATATCGGGTTGGATAAGGTTAACAAGGATCGGTATCATCGGAGAGATAATCCCGATGGGATCATGCAGCTTGGATTGTCCGAGAATCGACTGT GTTTGGATTTGATTGAGAAATGGATAAAGGAGAATGTAAGGGATGCGCTAATGGGAGGTGGCGACGATGGTGAGTTGAGCATCAATGGAATAGCTGCATA CCAGCCGTTCGACGGGTTACTGAAGCTGAAAGTGGCTATGGCCGATTTCATGTCTCAAGTGATGGGGAGAGAGCTTACGTTTGATCCATCGAAAATGGTA TTGATGGCTGGTGCGACTCCAGCTCTCGAAATACTAACCTTCTGCTTGGCCGATCATGGAAATGCACTTCTCATTCCCACTCCATACTATCCTGGATTCG ACAAAGATATCAAGTCTCGAACAGGGGTGGAGCTAATACCGGTCCACTGCCGGAGCACAGACAACTTTATGTTAACAGTCACTGCTCTCGATCAAGCTTA CAACCAAGCAAGGAAACGGGGCCTGAAAGTTCGCGGGATTCTAATTTCCAACCCTTCGAATCCTGTTGGAAATATACTGTCTCGGCATACACTCTGTGAT GTGTTGGATTTCGCACAAGAGAAGAACATCCACATTATATCCGATGAAATATTTGCCGGGTCACGTTATGGTACCGAGGAGTTTGTGAGCATGGCAGAAA TTGTCGAAGCTGAAGAAGGTTATGATAAGGGCCGAGTTCATATCATATACGGGCTGTCTAAGGACCTTTCTCTTCCCGGATTCAGAGTCGGGGTTGTCTA TTCCTACAACGAAAACGTCTTGGCTGCTTCGAAACAGCTTACTAGATTCTCTTCCATTTCTGCTCCGACCCAGAGGCTTCTGATTTCCATGCTCTCGGAT ACAAAGTTCATCAATGAATATACCGAAACCAATAGAACGAAGATTCAGAGGATGCACGACCTGTTTGTCGAAGGTCTTAACCAATTAGGAATCAAGTGTG CAAAGAGCTGTGCAGGGTTATACTCCTGGGCTGATATGAGCTCGCTTATGTCCTTATATAGTGAAAAGGGAGAGCTTGAATTATGGGATAAGCTGTTGAA TATTGGTAAAGTCAATGTAACTCCCGGTTCGGCCTGCCACTGCATTGAACCGGGATGGTTCAGGTGCTGTTTTACTGCTTTAGCTGAAGAGGATCTTCCT GTTCTTATGGAGCGAATTGGAAAAGTCGCTGAAATTTCTAAATCTGAGCATTGA
AA sequence Show only first row Show all	>Lus10015023 pacid=23152834 polypeptide=Lus10015023 locus=Lus10015023.g ID=Lus10015023.BGIv1.0 annot-version=v1.0 MRLVVPLQGVVHGRGGLILGSLIPCALFYFFQLYLKRHRSPPTDPPPPSSSSNPTSPSASSLNLVDLPRSASRSNLLSRGSFGSVRLSSRGMAIAKPSES PYYIGLDKVNKDRYHRRDNPDGIMQLGLSENRLCLDLIEKWIKENVRDALMGGGDDGELSINGIAAYQPFDGLLKLKVAMADFMSQVMGRELTFDPSKMV LMAGATPALEILTFCLADHGNALLIPTPYYPGFDKDIKSRTGVELIPVHCRSTDNFMLTVTALDQAYNQARKRGLKVRGILISNPSNPVGNILSRHTLCD VLDFAQEKNIHIISDEIFAGSRYGTEEFVSMAEIVEAEEGYDKGRVHIIYGLSKDLSLPGFRVGVVYSYNENVLAASKQLTRFSSISAPTQRLLISMLSD TKFINEYTETNRTKIQRMHDLFVEGLNQLGIKCAKSCAGLYSWADMSSLMSLYSEKGELELWDKLLNIGKVNVTPGSACHCIEPGWFRCCFTALAEEDLP VLMERIGKVAEISKSEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10015023 [exp]	0	1
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10038899 [exp]	1.0	0.9210
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	3.7	0.8743
AT5G07320		APC3	ATP/phosphate carrier 3, Mitoc...		Lus10032523 [exp]	4.9	0.8728
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	7.3	0.8479
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039149 [exp]	12.6	0.8654
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10012091 [exp]	25.1	0.8402
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10007121 [exp]	29.9	0.8632
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014618 [exp]	32.8	0.8217
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	35.7	0.8398
AT3G62010			unknown protein		Lus10009251 [exp]	36.7	0.8150

Compare expression of checked genes

Lus10015023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.