Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51680 62 / 1e-10 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038900 [exp] 408 / 8e-145 AT5G51680 110 / 4e-28 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132000 [exp] 101 / 5e-25 AT5G51680 79 / 2e-16 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015024 pacid=23152735 polypeptide=Lus10015024 locus=Lus10015024.g ID=Lus10015024.BGIv1.0 annot-version=v1.0 ATGGATTCGAACGAGGCGATCGGAGGTTCAAAGAGAAGAAGGCATATCAGGGAGCCACCATCAGTTCCATTCCTATGGGAAGAGAAGCCAGGAATAGCCA AGAAAAACTGGTGTAAGCCTGTCAAACCAGTCACTCCATCAGCGCCGGCGGTGAAGCTCATTGCTTCGGTTCCTTTCGACTGGGAAGAGAAGCCCGGAAC CCCTCTATCGCGATTCTCGAAGCCTGACGAAGGAAGCCTTCCTTCGCCGGGAAAGCTCCTTCCTTTACCGCCGGCTATGATGTGCGCCGAGGGTGGAGTT CCCGACTGGTATAAAAAGTCCCCACCACCTTCGTCTCTCTTGGCGAATTGCCTGATCTCGTCCGCTGCTATTTCCGCTGCTGTTCCGGTCGTGGATTCCG AGATGATGGATAGCCAGTGGGAGAACGAGATCATACCACCTTCGTCGCCAGCTTACGAGAGTGACAGCAGCAGTACTAGTAGCTACGAGACTGGAAGGTC GAGCCTCGTGGGGTCTTCCTTCTTGGAATGCCTGTTCCCTTTGTACAGACAAGATTCGGCAGGCTCGCTTGATGGCTCTTCGAATTCGACTCAGAAACCA GAGCTCAATTTGCCGGAGGAGAATGATCGTGGTGCAGCTAGTATAACTGGGGCTCCGACGCTTGGAGACCTGATCATGATGAGTAGGAGGAGGAGCATCC AAAGGAAAGCTGTGAGAATGCGATTACATAATCCGTCAATGGAGCTCTTGGAGGGCAAGCCTTTCAGATGCAGCATATTCCCAACTGGGATGAAAATGGT GGAAGGGCTGCAGAGGAAGATGCACCAAACAAGACTGGCGCTCCTGTAG
AA sequence Show only first row Show all	>Lus10015024 pacid=23152735 polypeptide=Lus10015024 locus=Lus10015024.g ID=Lus10015024.BGIv1.0 annot-version=v1.0 MDSNEAIGGSKRRRHIREPPSVPFLWEEKPGIAKKNWCKPVKPVTPSAPAVKLIASVPFDWEEKPGTPLSRFSKPDEGSLPSPGKLLPLPPAMMCAEGGV PDWYKKSPPPSSLLANCLISSAAISAAVPVVDSEMMDSQWENEIIPPSSPAYESDSSSTSSYETGRSSLVGSSFLECLFPLYRQDSAGSLDGSSNSTQKP ELNLPEENDRGAASITGAPTLGDLIMMSRRRSIQRKAVRMRLHNPSMELLEGKPFRCSIFPTGMKMVEGLQRKMHQTRLALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51680			hydroxyproline-rich glycoprote...		Lus10015024 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	2.4	0.9303
AT5G51680			hydroxyproline-rich glycoprote...		Lus10038900 [exp]	3.5	0.9188
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	4.9	0.9339
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10004707 [exp]	6.0	0.8979
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	8.8	0.9016
AT5G65495			unknown protein		Lus10002656 [exp]	10.7	0.9241
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10034271 [exp]	10.9	0.9051
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10033873 [exp]	13.5	0.8891
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10000286 [exp]	15.9	0.9121
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	17.5	0.9169

Compare expression of checked genes

Lus10015024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.