Plant FIBer expression Database

Lus10015025 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G25380 77 / 1e-17 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1)
AT1G12440 77 / 2e-17 A20/AN1-like zinc finger family protein (.1.2)
AT4G12040 76 / 1e-16 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2)
AT4G22820 74 / 3e-16 A20/AN1-like zinc finger family protein (.1.2)
AT3G52800 71 / 3e-15 A20/AN1-like zinc finger family protein (.1)
AT2G36320 70 / 7e-15 A20/AN1-like zinc finger family protein (.1)
AT3G12630 69 / 2e-14 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
AT2G27580 67 / 7e-14 A20/AN1-like zinc finger family protein (.1.2)
AT4G14225 65 / 3e-13 A20/AN1-like zinc finger family protein (.1)
AT1G51200 65 / 7e-13 A20/AN1-like zinc finger family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038901
[exp]
369 / 5e-131 AT4G25380 80 / 9e-19 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1)
Lus10030150
[exp]
83 / 8e-20 AT4G12040 119 / 8e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2)
Lus10037702
[exp]
76 / 8e-17 AT3G12630 176 / 1e-56 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Lus10015697
[exp]
75 / 1e-16 AT3G12630 178 / 1e-57 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Lus10007015
[exp]
75 / 1e-16 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2)
Lus10031833
[exp]
74 / 2e-16 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4)
Lus10031262
[exp]
74 / 3e-16 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4)
Lus10006671
[exp]
74 / 3e-16 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2)
Lus10028903
[exp]
74 / 4e-16 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G130000
[exp]
83 / 8e-20 AT4G22820 121 / 1e-35 A20/AN1-like zinc finger family protein (.1.2)
Potri.015G131900
[exp]
82 / 1e-19 AT4G22820 123 / 2e-36 A20/AN1-like zinc finger family protein (.1.2)
Potri.012G130100
[exp]
79 / 3e-18 AT4G22820 114 / 7e-33 A20/AN1-like zinc finger family protein (.1.2)
Potri.015G131500
[exp]
77 / 6e-18 AT4G22820 114 / 3e-33 A20/AN1-like zinc finger family protein (.1.2)
Potri.001G018600
[exp]
72 / 2e-15 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4)
Potri.004G184300
[exp]
71 / 3e-15 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2)
Potri.003G205500
[exp]
71 / 3e-15 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4)
Potri.001G115000
[exp]
71 / 5e-15 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2)
Potri.009G144100
[exp]
69 / 1e-14 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2)
Potri.001G269400
[exp]
69 / 2e-14 AT3G12630 160 / 2e-50 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01428 zf-AN1 AN1-like Zinc finger
Representative CDS sequence
>Lus10015025 pacid=23152808 polypeptide=Lus10015025 locus=Lus10015025.g ID=Lus10015025.BGIv1.0 annot-version=v1.0
ATGGCTCCTTCACCTTGCGTGCACGGCTGCATGGCCAATTGCCCCCACTGCCACTGCTACGGACGCCCTATCTTCGGCAACTCAGATATCGCCGCTGGCA
ACAGCGATTCGTCCACGTCGGTGTTTGGAAACGCGATTCAGTCGCCTGCGAAGCGTCTTCACGCGTTCGGCCAAGCTTGCGGCCCGGTTTTCCCCTCGAG
CTCTTCCCCTTTCCGCCGCATCAAGTTCGGCCCCAAAGATGGCGAGGGGAAAGGACCGGTGAAGCCGGTCGAGAAGCAGCCGTCGAAGAAGCGTCCGTTC
TACTTCTTTCCTGCGGCGACGGTTGACGCGACGGTTCCTCCGTCCACCAGACCGTCCGGTTCCTTGTTCCGTTCCGTCTGTGTCACGGATGGCGACGAGG
CCAGGTTGAAGGCGAACCGCGAGTTCTTCACTCCGGTTCCCCGCAAACCCGGCTTCGATCCGACTGACATGACCTTCGGTAACGCCGCCGCCGCTGCGGC
CAACGCGAGGGAGGAAGCGAAGAAGTGGTGCGGCAGTTGCAATAAGCGGGTGGCGCTGTTAGGGTTCAAGTGCAGGTGTACGAAATTCTTCTGCGGGAAG
CATCGGTATCCTGAGGAGCATGGTTGTACGTTCGATCACGTGGCTTTCGGGAGGCGGATTCTCGAGAAACAGAATCCTGTTCTTCAGACCGATAAGCTGG
TGGACAGAATCTGA
AA sequence
>Lus10015025 pacid=23152808 polypeptide=Lus10015025 locus=Lus10015025.g ID=Lus10015025.BGIv1.0 annot-version=v1.0
MAPSPCVHGCMANCPHCHCYGRPIFGNSDIAAGNSDSSTSVFGNAIQSPAKRLHAFGQACGPVFPSSSSPFRRIKFGPKDGEGKGPVKPVEKQPSKKRPF
YFFPAATVDATVPPSTRPSGSLFRSVCVTDGDEARLKANREFFTPVPRKPGFDPTDMTFGNAAAAAANAREEAKKWCGSCNKRVALLGFKCRCTKFFCGK
HRYPEEHGCTFDHVAFGRRILEKQNPVLQTDKLVDRI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G25380 AtSAP10, SAP10 Arabidopsis thaliana stress-as... Lus10015025
[exp]
0 1

Lus10015025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.