Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51640 611 / 0 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 603 / 0 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) AT4G11090 246 / 4e-76 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT1G01430 232 / 1e-70 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT1G70230 231 / 1e-70 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT4G23790 230 / 4e-70 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT5G15900 227 / 6e-69 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT5G15890 229 / 7e-69 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT3G28150 221 / 1e-66 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT4G01080 218 / 2e-65 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038902 [exp] 909 / 0 AT5G51640 615 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10031117 [exp] 671 / 0 AT5G51640 608 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10031695 [exp] 663 / 0 AT5G51640 613 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10024167 [exp] 251 / 3e-78 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10005952 [exp] 235 / 1e-72 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10029454 [exp] 236 / 4e-72 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10032367 [exp] 236 / 6e-72 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10003061 [exp] 233 / 3e-71 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10033950 [exp] 233 / 1e-70 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131600 [exp] 678 / 0 AT4G25360 671 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) Potri.012G129700 [exp] 642 / 0 AT4G25360 640 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) Potri.004G105500 [exp] 253 / 7e-79 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 250 / 1e-77 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.001G093800 [exp] 247 / 3e-76 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.017G073700 [exp] 243 / 4e-75 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.003G137800 [exp] 242 / 4e-74 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.002G168400 [exp] 241 / 5e-74 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.014G095800 [exp] 236 / 5e-72 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.004G105700 [exp] 234 / 2e-71 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10015026 pacid=23152727 polypeptide=Lus10015026 locus=Lus10015026.g ID=Lus10015026.BGIv1.0 annot-version=v1.0 ATGAAGTCAGCTTGGCCGAAATCTTCTGGTTATTCTTCTTCCATGGCTGGACTCCCTAGGTCTTTAGCTTACATTACAGCTTCAGTGGCTGGCCTTGCTA TTTTTCTGGTTCTTGCTTCTTCGCTCTTGGTGTCCTACCCTATCTCTTCTGCTGTTCAAGGCTACTTCTACAAGGTTGATTCTTCATCATTGTCATCATC ACAGGCTGTTGAACAGCTGCTGAATCGGACCGATAGTTTTGGTAATTTTGATGCCAGTAGCACTGGGAGATCATCGGCCTTTGTTGCCAATTCGAGCCGT GTAGATATTAAGAATCCTGCTAGTGTAGATAATGGTGTCGAATCAAAGGTTGATTCAAAGTCGAAGAGCGAGGGAGATGATTCGAACATGGTAGCTCAAG AGGTGAAAGCTGGTTCAGATGATTCAGGGTGTGATCTGTTCAACGGAACATGGTTCTACGATCCGCTCGGGCCATTGTACACGAACAACACTTGCCCGGT CATCACGCAGATGCAGAACTGCCAAGGCAACGGAAGACCTGACCACGAGTACGAGAATTGGCGATGGAAGCCCTCTCGATGCGAGCTTCCCCGGTTCGAT GCAAAGAAGTTCCTCGAACTTATGAGAGGAAAGACCATAGCTTTTATTGGCGACTCTGTGGCTCGAAACCAGATGGAGTCGCTCCTCTGCCTTCTCTGGC AGGCAACTCCGAAAAACCGAGGGAACAAGAGAATGCAGCGGCATTACTTCAAATCGACCGATACAACTGTCATTCGAATGTGGTCGTCGTGGCTTGTTCA TCAAACATCACAAGCTATCGGATATGCCCCGGAAGGTGTCACGAAGGTTCACCTCGATGAACCAGACTATAACTTCATGGAATTCGTCCCGAATTTCGAT GTTGTTGTGCTCTCTTCAGGCCATTGGTTCGCCAAGCAGTCCGTCTACGTCTTGAACAAGAGCGAGATCGCGGGAGGGCAACTATGGTGGCCGGACAAGT CCCGCGAGATGAAGGTCAACAACATACAAGCATTCGAGATATCCGTCGAGACCATCGTGGCTTCGATGCTCACACATCCAAACTACACCGGGCTGACCAT CCTCCGGTCCTATTCCCCCGACCACTACGAAGGCGGAGCATGGAACACTGGCGGATCGTGCACTGGGAAAACCAGGCCTCTCGAGCCAGGCCACCTGGTG AAGAACGAGTTCACGAACATAATGCACGAGAAGCAGATGACAGGGTTCGAGAAGGGACTCAAAAAGGCAGTGGAAACAAAGAAGAACAAGAAGTCGAAAT TTGTGGTGATGGACATCACCGAAGTGTTTGGCTATCGACACGATGGCCATCCTGGACCGTACCGGAGCCTTGATCCGAATAAAAGGACACAATTTGGCCC CGACGGAAGGCCTCCTCCTCAAGATTGCTTGCATTGGTGCATGCCAGGACCGATCGATACATGGAACGAACTCGTGCTCGAGATTGTGAGAAGAGAATTC GAAAAGAAGTCGTCTTCCTCATCTTGA
AA sequence Show only first row Show all	>Lus10015026 pacid=23152727 polypeptide=Lus10015026 locus=Lus10015026.g ID=Lus10015026.BGIv1.0 annot-version=v1.0 MKSAWPKSSGYSSSMAGLPRSLAYITASVAGLAIFLVLASSLLVSYPISSAVQGYFYKVDSSSLSSSQAVEQLLNRTDSFGNFDASSTGRSSAFVANSSR VDIKNPASVDNGVESKVDSKSKSEGDDSNMVAQEVKAGSDDSGCDLFNGTWFYDPLGPLYTNNTCPVITQMQNCQGNGRPDHEYENWRWKPSRCELPRFD AKKFLELMRGKTIAFIGDSVARNQMESLLCLLWQATPKNRGNKRMQRHYFKSTDTTVIRMWSSWLVHQTSQAIGYAPEGVTKVHLDEPDYNFMEFVPNFD VVVLSSGHWFAKQSVYVLNKSEIAGGQLWWPDKSREMKVNNIQAFEISVETIVASMLTHPNYTGLTILRSYSPDHYEGGAWNTGGSCTGKTRPLEPGHLV KNEFTNIMHEKQMTGFEKGLKKAVETKKNKKSKFVVMDITEVFGYRHDGHPGPYRSLDPNKRTQFGPDGRPPPQDCLHWCMPGPIDTWNELVLEIVRREF EKKSSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10015026 [exp]	0	1
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10038902 [exp]	1.0	0.9477
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	2.0	0.9125
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	4.5	0.9296
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	4.6	0.9241
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	4.6	0.9046
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10029506 [exp]	4.9	0.8811
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10011522 [exp]	6.0	0.8569
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	6.9	0.9055
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	8.5	0.9014
AT1G18520		TET11	tetraspanin11 (.1)		Lus10000869 [exp]	8.7	0.8712

Compare expression of checked genes

Lus10015026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.