Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25320 185 / 5e-55 AT-hook AT hook motif DNA-binding family protein (.1) AT4G12080 174 / 3e-51 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT5G62260 174 / 5e-51 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 167 / 4e-49 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 164 / 7e-47 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 150 / 7e-43 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 129 / 1e-34 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT1G63470 129 / 2e-34 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 120 / 5e-31 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 119 / 3e-30 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038903 [exp] 463 / 6e-165 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10031696 [exp] 197 / 3e-60 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10031118 [exp] 190 / 6e-59 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1) Lus10004022 [exp] 181 / 3e-54 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 181 / 4e-54 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 166 / 2e-48 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10037858 [exp] 133 / 8e-36 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10030381 [exp] 130 / 1e-34 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10008533 [exp] 129 / 2e-34 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129500 [exp] 219 / 8e-69 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.014G070000 [exp] 209 / 3e-65 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 203 / 5e-63 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G115800 [exp] 181 / 1e-54 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 177 / 4e-53 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G158200 [exp] 145 / 8e-41 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.002G005000 [exp] 145 / 5e-40 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.014G082100 [exp] 143 / 8e-40 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.001G143500 [exp] 142 / 3e-39 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 138 / 1e-37 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10015027 pacid=23152719 polypeptide=Lus10015027 locus=Lus10015027.g ID=Lus10015027.BGIv1.0 annot-version=v1.0 ATGGAGGCACCACAAGGAATCGTTTCTTCAGGTGTAACAGTTGACGAAGCTCCGGAGAGCTACATATTAGCTCCTCGAGCTGAAAACCCGAACCCGAATA ACCCGAATAGCCCGAATCCGGTTGTGAATTCGATCCAGTTCGGGAACCCGCCGGCGATGTCAGCTCCGCCGGAGGGGAAGAAGAGAGGGAGGCCGAGGAA GTACGGACCTGACGGGAGTTTGTCGCCGATGCCGATATCGGCGTCGATTCCGCTGACATCCGGAGGAGTAGATTACTCGTCGCCGCCGTCGGCGTTGAAA AGAGGTAGAGGCAGGGGAAGAGCAAAAGGTTATTTGGACTCGGTGAAGAAGTTTCAGAGAATCGAATACCGCAGCCCAGGAGAAGGAGTTGCTTACTCTT TCGGAGCGAATTTCACGCCACATATTCTTGAAGTGAATGCTGGCGAGGATGTTACAATGAAGGTCATGTCGTTTTCGCGAGAAAGTGATCGTGCCATATG CATTCTTTCTGCTACCGGCCCGATCTCGAATGTCACACTTCGCCAGCCTACTTCATCCGGCGGTACACTAACTTATGAGGGCCGGTTCGAGATACTTTCG TTATCTGGTTCGTACATTCTTACCGACACCGGAGGAACCAAGAGCAGAACGGGCGGAATGAGCGTGTCGTTGGCAGGTCCAGACGGCCGCGTAGTTGGCG GAGGACTCGCTGGTCTCTTGGTTGCTGCCGGTCCAGTACAGGTCGTCGTTGGCAGTTTCGTACCGGGTGGTCAGCAGATGGAGCAGCAGAAGAAGCATCG AATCGAAACACCGCCAGCTCGAGTCACGGTCCTCACCCCGGAAGAGCTGAAAGCAGCATACGCTGCCGCCAAGCCGCCAGCCATGAACGACATTCGCCCG CCTTCGTTCAACCATGTCCACATGTTTATGCATCCGTCTTCCGAGAACAAGAACAGCGCCGATGAAGACGAAGACTCGAGAAGTCACGAAGAGTTGAAGC CGCCCTGTGAGGTTACTTGCTGA
AA sequence Show only first row Show all	>Lus10015027 pacid=23152719 polypeptide=Lus10015027 locus=Lus10015027.g ID=Lus10015027.BGIv1.0 annot-version=v1.0 MEAPQGIVSSGVTVDEAPESYILAPRAENPNPNNPNSPNPVVNSIQFGNPPAMSAPPEGKKRGRPRKYGPDGSLSPMPISASIPLTSGGVDYSSPPSALK RGRGRGRAKGYLDSVKKFQRIEYRSPGEGVAYSFGANFTPHILEVNAGEDVTMKVMSFSRESDRAICILSATGPISNVTLRQPTSSGGTLTYEGRFEILS LSGSYILTDTGGTKSRTGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFVPGGQQMEQQKKHRIETPPARVTVLTPEELKAAYAAAKPPAMNDIRP PSFNHVHMFMHPSSENKNSADEDEDSRSHEELKPPCEVTC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10015027 [exp]	0	1
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	6.9	0.9147
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	7.3	0.9146
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	9.7	0.9110
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10006626 [exp]	10.8	0.8634
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	10.8	0.8993
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	11.9	0.9157
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10001555 [exp]	13.3	0.8977
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	20.4	0.9121
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	20.8	0.8998
AT1G03280			Transcription factor TFIIE, al...		Lus10019269 [exp]	21.5	0.8840

Compare expression of checked genes

Lus10015027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.