Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25340 202 / 7e-60 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G05420 160 / 1e-47 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G12340 143 / 9e-38 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48580 88 / 2e-20 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT5G45680 88 / 5e-20 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT3G25220 84 / 5e-19 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT5G48570 87 / 3e-18 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 82 / 1e-16 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT3G55520 78 / 2e-16 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 72 / 2e-14 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038905 [exp] 592 / 0 AT4G25340 313 / 1e-102 FK506 BINDING PROTEIN 53 (.1.2) Lus10031121 [exp] 238 / 3e-73 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10031700 [exp] 236 / 5e-72 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10006949 [exp] 92 / 2e-21 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10002339 [exp] 88 / 1e-20 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10025889 [exp] 85 / 1e-19 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10024735 [exp] 86 / 2e-19 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10003170 [exp] 85 / 2e-19 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10038215 [exp] 86 / 5e-18 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129200 [exp] 394 / 6e-134 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.015G130900 [exp] 230 / 2e-70 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.007G000500 [exp] 108 / 2e-25 AT3G12340 149 / 1e-38 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G075500 [exp] 89 / 3e-20 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.002G248200 [exp] 85 / 2e-19 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.010G201600 [exp] 84 / 8e-19 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G149400 [exp] 87 / 3e-18 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.008G057900 [exp] 79 / 3e-17 AT3G55520 236 / 7e-80 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 84 / 4e-17 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 82 / 1e-16 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10015029 pacid=23152769 polypeptide=Lus10015029 locus=Lus10015029.g ID=Lus10015029.BGIv1.0 annot-version=v1.0 ATGGGCTTCTTTGGGGTTGAAGTGAAGCCTGATAAACCTCATCCGTATCACTCTGACAATGCCCAGGGAACGCTTTACGTTACCCAGGCAACTCTTGGAC TCGGATCGTCCAAGGAGAGGAGCATACTGCAGTGTTCCAGAGGACACAACAGCCCAATTTTCCTGTGTTCGTTGCTGCCCGGTAAATCAGAATCTTGCTC CTTGCATCTGGAATTCAAGGATGAGCTTGTAGCGTTCTCGGTGGTGGGAAAGCGTAGCATCCACCTTTCCGGTTACTTCATTTCCGAGGAAGGAGATTAC CTTGGCGACGAAGATTCCGGTGAGGATATTGGTGAAACAGAATCGGATGATTCCAGCGAATTCGATTATGATGATGATGACTTGGACGATGATCTGGACA TGTTCCCGTCTTTGGAAGCTCCGAAGCGTGGAGTTCTTAATCGAAAGAAGCGAATGGTCGTGCTGGAAAGCGAAGATGAAGATGGTTTTCCAGTTTCTCA AGATCCTGAAACAGATGGACGAGAAGATAAGAGCAAAGAATCGAAGACGAAGAAGCGGAAAGTAAAGGCTACTGAACCGGATAGCCAACCGGAAAAGAAG AAGAAGAAGAAGAAAGGTAAGAAGGAAGCTGTAGCTGATATGGATGAGGATCATCAGAAAGAACTCACTGGAGAAGAAACCGAGAAACCTGCAGATGCTG ATCCCGGATCTCATGCGATCAATGGAAGTGAAGGAAGGGGGACTGATGCAGTTGAAACCGGCAAGATTTCCTCTCCTAAGAAGAACAAGAAGAAAAAGAA GAAGAACAAGAAGGCTGATGCGGACGGAGGGGGCGCAATTACAACTGTCCCGGACGGAAACGAAGCGAAATCGTCGTTGGTTTCGAACGAGAAGCAATCT GCTTCGAAAGCAAGAACCTTTTCGAACGGACTGGTGATCGAGGAGCTAGCCATGGGTAAACCAGATGGAAAAAGAGCTTCCCCTGGAAATCAGGTTAGCG TGCAGTACATCGGGAAGCTACAAAAGAACGGTGAGGCATTCGACTCGAACATCGGTAACGCTCCGTTTAAGTTCCGGCTAGGCGTGGGGCAAGTCATTAA AGGATGGGACGTTGGCGTTAACGGGATGAGAGTTGGGGACAAGAGAAGAATCACCATTCCTCCAGCAATGGGTTACGGGGAACGAGGTGCCGGCAGCAAG ATCCCTCCGGATTCGTGGCTGGTTTTCGACGTAGAGTTGGTGAATGTTCGGTGA
AA sequence Show only first row Show all	>Lus10015029 pacid=23152769 polypeptide=Lus10015029 locus=Lus10015029.g ID=Lus10015029.BGIv1.0 annot-version=v1.0 MGFFGVEVKPDKPHPYHSDNAQGTLYVTQATLGLGSSKERSILQCSRGHNSPIFLCSLLPGKSESCSLHLEFKDELVAFSVVGKRSIHLSGYFISEEGDY LGDEDSGEDIGETESDDSSEFDYDDDDLDDDLDMFPSLEAPKRGVLNRKKRMVVLESEDEDGFPVSQDPETDGREDKSKESKTKKRKVKATEPDSQPEKK KKKKKGKKEAVADMDEDHQKELTGEETEKPADADPGSHAINGSEGRGTDAVETGKISSPKKNKKKKKKNKKADADGGGAITTVPDGNEAKSSLVSNEKQS ASKARTFSNGLVIEELAMGKPDGKRASPGNQVSVQYIGKLQKNGEAFDSNIGNAPFKFRLGVGQVIKGWDVGVNGMRVGDKRRITIPPAMGYGERGAGSK IPPDSWLVFDVELVNVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10015029 [exp]	0	1
AT3G18600			P-loop containing nucleoside t...		Lus10038950 [exp]	2.2	0.8947
AT3G01790			Ribosomal protein L13 family p...		Lus10014597 [exp]	3.2	0.8749
AT5G27120			NOP56-like pre RNA processing ...		Lus10033846 [exp]	3.5	0.8514
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10023758 [exp]	3.5	0.8655
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	4.2	0.8852
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	5.3	0.8926
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10014210 [exp]	6.0	0.8600
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	10.9	0.8638
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	12.0	0.8633
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	12.5	0.8789

Compare expression of checked genes

Lus10015029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.