Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15570 897 / 0 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 240 / 3e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 234 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 232 / 1e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 155 / 2e-39 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 155 / 8e-39 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G47010 155 / 1e-38 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G05540 136 / 4e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 134 / 3e-32 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 132 / 1e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038906 [exp] 1413 / 0 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003960 [exp] 1191 / 0 AT4G15570 938 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033462 [exp] 229 / 9e-63 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 224 / 8e-61 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 218 / 1e-58 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003024 [exp] 156 / 7e-39 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 154 / 2e-38 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10035776 [exp] 154 / 7e-38 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035774 [exp] 148 / 1e-36 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G056700 [exp] 1056 / 0 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G168300 [exp] 231 / 4e-63 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 228 / 3e-62 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 222 / 3e-60 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G143450 [exp] 162 / 1e-40 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 161 / 2e-40 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 161 / 3e-40 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077700 [exp] 152 / 1e-37 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140501 [exp] 152 / 1e-37 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G086400 [exp] 152 / 2e-37 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015030 pacid=23152800 polypeptide=Lus10015030 locus=Lus10015030.g ID=Lus10015030.BGIv1.0 annot-version=v1.0 ATGACGGTGGTGAACAAGGAGAAGCTTCAGGAGGACGTCTCCTTCAACCGATTTTGCAAAATCGTCCTTGGTTGGGACCATTATCGCCTTCTCGGCGAAG CTGATAAGAACAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGACAAGAGTGACAATGATTTAAAAGAAGTTAAGAATACTTACAAAGATGTCGA TGATTACCTCTCCACCTTCGAGCCCCTCTTGTTCGAAGAAGTGAAAGCCAATATTACTCAGAATAAAGATGATGAAGAAGTGACGAGATGGGAAATGAGG TTGGTTACCGAGTGCAATGAAGTCGAAGGGTTTTTCCAGGTTGCCATTACTTATAATGGGGATACTGAGGAGAACAGAATCTCCCAAAATGATCTGCTCC TTCTTCAAAAGGAGACGACCAAAACGACAGCATACGCTTATGCTTTGGTTGAGCATACGCAAAATAATTGCCTTAGGCTTAGGATGTGTTTGGCCGGAGA AATCAAGAATACACGTTTGGATGTCGCTGAATCCAGTCCGAGGCTGTTAAACATGCAATCTCTTATCAGTGCTCCTTTGAAGCCAGAACAGAAGCCCTTG CACAGCTTAAAGATATGCAGTTTGTCAACGATTTCGCGTGAATATATAGCTTTGCGGTCAATCGGGTCCCTTCCTTTCAAAGATTTAATCCTAAAAGCCT CCGACAGACCTGATTCAGAAGACCAGGGATGGAAAGTTTCTGAAGCTCTCCGTGGACATTTTGAAGAAACCCTTAACCTGTCACAGTTAGACGCTGTAAA TGCTGGTCTATCACGTAAACGCTTTGTCCTGATACAGGGTCCTCCAGGAACAGGAAAAACACAAACGATTCTTGCACTACTCAGTGCTATTCTTCATGCC ACTCCAGCTCGGGTGCACTTGAAGGCTGGCTCACGTGAAACTAAATGTGGACCACAATTTTCAGTTCAAGACAAGTACAACCATTGGGCTCGAGCATCTC CATGGTTGACTGGTATCAATCCCAGAGATGAGATTATGCCTAAAGGTGGCGATGATGGATTCTTTCCTACTACTGGAAGTGAGCTGAAACCAGAGATAGT TGCATCAAGTCGAAGATATCGTCTAAGAGTACTCGTATGCGCTCCATCAAATTCTGCACTTGATGAAATAGTGTTGCGCCTTCTCAGAAATGGTGTTCGT GATGAAACTGTCAGTACATATAACCCCAAAATTGTGCGCATCGGTCTTAAAGCACATCACTCAGTTCAGTCAGTCTGCATGGATTACCTTGTGAGACAAA AACAAAACGAGTCGAACAAACAGAGGCAGGGAGCCGCTGGAGGGGACACAGATAATATCCGCTCTTCAATTCTTGACGAGGCTGTTATTGTTTTTTCCAC TCTCAGCTTCAGTGGCTCGGCACTTTTCAGTAAAATGAATAAAAGCTTTGATGTTGTAATCATTTTTGAAGATGTTGTGATCATTGATGAAGCTGCCCAA GCTGTAGAACCTGCGACTCTTGTTCCTTTATCCAATGGCTGCAAACAAGTGTTTCTGGTTGGTGATCCAGTTCAATTACCAGCGACTGTGATTTCTTCTA CTGCCAGTAAATTCGGTTATTGTACAAGTTTGTTTGAGAGGTTTCAGAGAGCCGGATATCCAGTAAATATGCTGAAGATGCAGTACCGTATGCATCCAGA GATTAGAACCTTCCCTTCTAGCGAATTCTACAGCGAGGCTCTGGAGGATGCAGCGGATATGGAGCAGAAGACGAGACGGGACTGGCATAAGTACCGCTGC TTTAGCCCGTTTTGTTTCTTCGATCTGCACGAAAGCCAAGAGTCACAGACCTCAGGAAGCGGGTCGTATGAAAACACTGACGAGGCAGAATTCGTTCTTC TCCTATACCGTAAGCTGGTGTCTATGCATCCAGAACTCGGGTTGAGTTCGCAGTTCGCCATGATATCCCCGTATAGATCCCAAGTGAAGCTGTTGCAAGA TCGATTCAAGGAAAATTTCGGCCAGGACTCTAGAGAGTTCGTCGATATTCAGACAGTTGATGGTTTCCAGGGTCGAGAGAAGGATGTTGCAATTTTCTCG TGTGTGAGGGCAAGCAAAAACAAAGGTATCGGGTTCGTATCCGATTTTCGGAGGATGAACGTCGGTATCACCCGCGCAAAGTCCACTGTTCTGGTTGTAG GGTCAGCAGCAACTCTGAGGCGAGATGAGCACTGGACGAACCTGATCGAAAGTGCGGAGAAGAGGAACGTTCTTTTCAAGGTGTCTAAGCCATATACTTC GTTCTTGAGCGATTCAAGTATGGAAGCCATGACCGTTAAGAAGGAGGAGGGTGTGGAGGGGTGA
AA sequence Show only first row Show all	>Lus10015030 pacid=23152800 polypeptide=Lus10015030 locus=Lus10015030.g ID=Lus10015030.BGIv1.0 annot-version=v1.0 MTVVNKEKLQEDVSFNRFCKIVLGWDHYRLLGEADKNKKKKKEEEEEEEDKSDNDLKEVKNTYKDVDDYLSTFEPLLFEEVKANITQNKDDEEVTRWEMR LVTECNEVEGFFQVAITYNGDTEENRISQNDLLLLQKETTKTTAYAYALVEHTQNNCLRLRMCLAGEIKNTRLDVAESSPRLLNMQSLISAPLKPEQKPL HSLKICSLSTISREYIALRSIGSLPFKDLILKASDRPDSEDQGWKVSEALRGHFEETLNLSQLDAVNAGLSRKRFVLIQGPPGTGKTQTILALLSAILHA TPARVHLKAGSRETKCGPQFSVQDKYNHWARASPWLTGINPRDEIMPKGGDDGFFPTTGSELKPEIVASSRRYRLRVLVCAPSNSALDEIVLRLLRNGVR DETVSTYNPKIVRIGLKAHHSVQSVCMDYLVRQKQNESNKQRQGAAGGDTDNIRSSILDEAVIVFSTLSFSGSALFSKMNKSFDVVIIFEDVVIIDEAAQ AVEPATLVPLSNGCKQVFLVGDPVQLPATVISSTASKFGYCTSLFERFQRAGYPVNMLKMQYRMHPEIRTFPSSEFYSEALEDAADMEQKTRRDWHKYRC FSPFCFFDLHESQESQTSGSGSYENTDEAEFVLLLYRKLVSMHPELGLSSQFAMISPYRSQVKLLQDRFKENFGQDSREFVDIQTVDGFQGREKDVAIFS CVRASKNKGIGFVSDFRRMNVGITRAKSTVLVVGSAATLRRDEHWTNLIESAEKRNVLFKVSKPYTSFLSDSSMEAMTVKKEEGVEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10015030 [exp]	0	1
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	8.8	0.7805
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	9.5	0.8090
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10043419 [exp]	9.6	0.7501
AT4G02110			transcription coactivators (.1...		Lus10002432 [exp]	10.2	0.7725
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	12.7	0.8270
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034434 [exp]	14.7	0.8061
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	18.0	0.7665
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	19.0	0.7751
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	22.4	0.7778
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	24.9	0.7740

Compare expression of checked genes

Lus10015030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.