Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129100 [exp] 38 / 0.0006 AT1G12380 890 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015031 pacid=23152720 polypeptide=Lus10015031 locus=Lus10015031.g ID=Lus10015031.BGIv1.0 annot-version=v1.0 ATGGTTGGCTGCGAAGATGATATGCTGAACGAGGTCTTTGACGATGCTCCACCAGTGTTTTACTGGCGGCTTGAGGCTGGGTGGGATTATGAATCAGCCT TGAGTGGACCAACTGGGTCAACCTTGGAAGCACTCAGGAGTGAATATTTGTTCTCAAAGAGCAGGCCACAACTGATTTTTAAGCACTCATTTGAACGAGA GATACGACCTGTTGGAGCATACCTATGTTCTGCCCTCGTTTGTCCTATGTTGCAGGAATATTGGAGCAGACCGGTGATCAACGATCAATCTCCAATCAGG TTTCAAGAACCAAGATCATTTTTTCCAACCGAGATCGTCACCTTGGTCGAAACAAGGTTCAAGTAA
AA sequence Show only first row Show all	>Lus10015031 pacid=23152720 polypeptide=Lus10015031 locus=Lus10015031.g ID=Lus10015031.BGIv1.0 annot-version=v1.0 MVGCEDDMLNEVFDDAPPVFYWRLEAGWDYESALSGPTGSTLEALRSEYLFSKSRPQLIFKHSFEREIRPVGAYLCSALVCPMLQEYWSRPVINDQSPIR FQEPRSFFPTEIVTLVETRFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015031 [exp]	0	1
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	11.2	0.7291
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10024938 [exp]	15.7	0.5947
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10042802 [exp]	23.7	0.6385
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10007618 [exp]	27.7	0.6300
AT3G43660			Vacuolar iron transporter (VIT...		Lus10042804 [exp]	31.4	0.5683
AT2G31600			unknown protein		Lus10025558 [exp]	46.7	0.5772
AT5G53590			SAUR-like auxin-responsive pro...		Lus10006820 [exp]	49.1	0.5552
					Lus10036643 [exp]	65.7	0.5530
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10005139 [exp]	73.1	0.5855
AT4G32600			RING/U-box superfamily protein...		Lus10013144 [exp]	116.6	0.4873

Compare expression of checked genes

Lus10015031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.