Plant FIBer expression Database

Lus10015034 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000458
[exp]
141 / 5e-40 ND /
Lus10009719
[exp]
78 / 1e-18 ND /
Lus10033006
[exp]
62 / 1e-12 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10015034 pacid=23171505 polypeptide=Lus10015034 locus=Lus10015034.g ID=Lus10015034.BGIv1.0 annot-version=v1.0
ATGGATCAGAAGGGGGTTGGGTTCTATTTCTGGGCCGGGCGGGAGGTGAAGGCCATAAGAGAAGATTTCTCGGTAAGGAAGAGAGCAAAAAGACACCGTC
ATCTATCTCAACCAATTTACCGAGGCGTTGGAAATCCAAACCGGCTCAGAGAATCGCTGGTGGCTGCTAGCCCTTCCTTTCGCCAACAAAACCAAGAAGG
CATCCTTGACGATTTCCCAGTCTTTCCTTGCCGAGCCCCGCCTCTCTTCGCCATTCGAAGTACTACCTCTGCCTTCTCTTTGGGAGTTTACTTGACCTAT
TCCCCAGTCTCCCGCATTGCTCAAGTAAGTGTGCGACTCCGTATGAGGACCTCCTTCCCTTCTGCCCACTCTCCGTTCACACGGTTCTCAAAGCAGAGGA
GGAAGGGTGTAAGAAGGTACCACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAA
AGATCGTAAGGGAAAAGCCTTCCATTTCCATCAAATGACCCGGCCTCCCCTGGCTCTTCCACCTTCCGGGCTCCCCTTCCTCCCTATGCTCCCCCGGCGC
AGGCCTACCACGCTTCGCGCCTGCGGCGTTTTCGCCAGACGGTCTTTGCCAGTAGTGCCATCCTCCCCGCTGGCTGTATGGGCGGGTTGTCCCTCGATGC
TGCGTAGCTGTATGGGCGGGTTGTCCCTCAATGCTACGTTCTGTTAG
AA sequence
>Lus10015034 pacid=23171505 polypeptide=Lus10015034 locus=Lus10015034.g ID=Lus10015034.BGIv1.0 annot-version=v1.0
MDQKGVGFYFWAGREVKAIREDFSVRKRAKRHRHLSQPIYRGVGNPNRLRESLVAASPSFRQQNQEGILDDFPVFPCRAPPLFAIRSTTSAFSLGVYLTY
SPVSRIAQVSVRLRMRTSFPSAHSPFTRFSKQRRKGVRRYHEPSVPHIYPEASVVHRFHRMLLSLGKDRKGKAFHFHQMTRPPLALPPSGLPFLPMLPRR
RPTTLRACGVFARRSLPVVPSSPLAVWAGCPSMLRSCMGGLSLNATFC

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10015034
[exp]
0 1
AT4G33920 Protein phosphatase 2C family ... Lus10000700
[exp]
5.2 0.8512
AT2G29670 Tetratricopeptide repeat (TPR)... Lus10025981
[exp]
7.3 0.8512
AT5G22460 alpha/beta-Hydrolases superfam... Lus10004882
[exp]
9.0 0.8512
AT1G66950 ABCG39, PDR11, ... ATP-binding cassette G39, plei... Lus10006277
[exp]
10.4 0.8512
AT5G51740 Peptidase family M48 family pr... Lus10032437
[exp]
11.6 0.8512
AT4G20060 EMB1895 EMBRYO DEFECTIVE 1895, ARM rep... Lus10038371
[exp]
12.7 0.8512
AT3G06920 Tetratricopeptide repeat (TPR)... Lus10038657
[exp]
13.7 0.8512
AT1G01450 Protein kinase superfamily pro... Lus10041113
[exp]
14.7 0.8512
AT1G69940 ATPPME1 Pectin lyase-like superfamily ... Lus10016711
[exp]
15.6 0.8512
AT1G35670 CPK11, ATCDPK2,... calcium-dependent protein kina... Lus10017911
[exp]
16.4 0.8512

Lus10015034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.