Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49330 183 / 5e-57 hydroxyproline-rich glycoprotein family protein (.1) AT2G16190 164 / 9e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040480 [exp] 182 / 6e-58 AT2G16190 171 / 2e-52 unknown protein Lus10011284 [exp] 143 / 2e-43 AT2G16190 128 / 4e-37 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080300 [exp] 223 / 2e-73 AT1G49330 155 / 1e-45 hydroxyproline-rich glycoprotein family protein (.1) Potri.009G113900 [exp] 202 / 3e-64 AT1G49330 199 / 1e-61 hydroxyproline-rich glycoprotein family protein (.1) Potri.004G152600 [exp] 199 / 3e-63 AT1G49330 193 / 6e-59 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015036 pacid=23171529 polypeptide=Lus10015036 locus=Lus10015036.g ID=Lus10015036.BGIv1.0 annot-version=v1.0 ATGGCCAAGACATCTTCCTCGTCCAAACAACACAGCAGCGATCCTCTGTCACTCCAGCTGGGTCCCACCAGTAGTATCACCAAACCCCAACCCCGCAGCA ATATGGCGCGAAGGGCACGGAGGTCGAGGTCAAACCCAATTCCGGAAGGGAAATCGTTGACCATAGTGCCCCCGTACCCATGGGCGACCGACCGGAGGGC GAAGATCCACACGATGGAGTACCTGACGGCGCAGGGGATAACCACCATCACGGGCGCGGTGGAGTGCAAGAGGTGCAACCAGAAGTACGAGGTAGAGCTG AACCTGAGGGACAAGTTCGAGCAAGTGGCTGGGTTCATAAGGGAGAATAGGTACGTGATGAATGACCGTGCCCCCAGGGTGTGGATCGACCCCACGCTCG ATGACTGCAGGATGTGCGGCCATACGGAGTGCGTGAAGCCGGTTATCGAGAAGCGTAGGAACATCAACTGGCTGTTCTTGCTTCTGGCGCAGTGGATCGG TTGCTGTAAGCTTTGGGATTTGAAGTATTTTTGCAAGCATACTTTGAATCACCGCACTGGGGCTAAGGATCGGGTCCTGTACTTGACTTACTTGGCTCTT TGTAAGCAATTGCTGCCCTCCACATCGGCTCCCTTTGATGTTTGA
AA sequence Show only first row Show all	>Lus10015036 pacid=23171529 polypeptide=Lus10015036 locus=Lus10015036.g ID=Lus10015036.BGIv1.0 annot-version=v1.0 MAKTSSSSKQHSSDPLSLQLGPTSSITKPQPRSNMARRARRSRSNPIPEGKSLTIVPPYPWATDRRAKIHTMEYLTAQGITTITGAVECKRCNQKYEVEL NLRDKFEQVAGFIRENRYVMNDRAPRVWIDPTLDDCRMCGHTECVKPVIEKRRNINWLFLLLAQWIGCCKLWDLKYFCKHTLNHRTGAKDRVLYLTYLAL CKQLLPSTSAPFDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49330			hydroxyproline-rich glycoprote...		Lus10015036 [exp]	0	1
AT5G59845			Gibberellin-regulated family p...		Lus10018708 [exp]	6.2	0.7528
					Lus10041616 [exp]	7.4	0.8521
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10015550 [exp]	9.5	0.8113
					Lus10033727 [exp]	9.6	0.8419
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	9.9	0.8088
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10017744 [exp]	10.4	0.7748
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032435 [exp]	11.0	0.7929
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	12.6	0.8163
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	15.1	0.8109
AT5G25820			Exostosin family protein (.1)		Lus10023927 [exp]	19.0	0.7817

Compare expression of checked genes

Lus10015036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.