Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09550 722 / 0 Ankyrin repeat family protein (.1) AT3G12360 668 / 0 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT1G07710 314 / 8e-100 Ankyrin repeat family protein (.1) AT2G01680 311 / 9e-99 Ankyrin repeat family protein (.1) AT2G31820 295 / 5e-91 Ankyrin repeat family protein (.1) AT5G60070 286 / 4e-89 ankyrin repeat family protein (.1) AT1G05640 287 / 2e-88 Ankyrin repeat family protein (.1) AT5G02620 279 / 2e-86 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54710 99 / 2e-21 Ankyrin repeat family protein (.1) AT1G34050 92 / 2e-19 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003986 [exp] 987 / 0 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 692 / 0 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 659 / 0 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10040335 [exp] 598 / 0 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015224 [exp] 316 / 2e-100 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 315 / 3e-100 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 315 / 3e-100 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 311 / 2e-98 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 295 / 2e-91 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G214500 [exp] 738 / 0 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 695 / 0 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 687 / 0 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 327 / 8e-105 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 327 / 1e-104 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 323 / 4e-103 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 321 / 2e-102 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 317 / 6e-101 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 315 / 2e-100 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 300 / 3e-94 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10015037 pacid=23171531 polypeptide=Lus10015037 locus=Lus10015037.g ID=Lus10015037.BGIv1.0 annot-version=v1.0 ATGAGAACGGACGAAGGAAACGAGAGGGACCTGGAGAAGGGATTGTTCTTCAGATCTACCCGTTCAAGTCCAAACCTGTTCTCCGACGCCTCTTCATTTA CTTCGCCTGGGCCGCCGTCGCCGTCGTCGACGCCGAGAGGGACTCTAGTGCTGTCCAACTCAGGCAAGGCTCTGCTCGTCTCCAATTCCAACAAATCCCT AGGCATTTCGAATTCCGGGAAGCGTTACGACAGGAAGAAGTACGTGAAGCAGGTAACGGGTCGCCACAATGACACTGAGCTTCACTTGGCCGCCCAACGA GGCGACCTGGCCTCCGTCCGCCACATGCTCGATGAGGTCAGTGCCCAGATGATGGGGACTCTAGGGGGTGCCGATTTCGACGCCGAGGTTGCAGAGATAA GGTCAGCAGTGGTGAACGAGGTGAATGAGCTAGGAGAAACGGCTCTGTTCATTGCAGCAGAAAAGGGCCACCTTCACATTGTGAGGGAGTTACTGCAGTT CACTTCTAAAGCATCTATTGCCTTGAAGAACAAGGCTGGCTTTGATGCTCTTCACATTGCTGCAAGTCAAGGCCATCAAGAAATTGTACAGGTTCTGTTA GAGGTGGATCCAACACTGAGCAAAACAGTGGGGCAATCGAACGCAAGTCCGTTGGTATCAGCTGCGGCCAAGGGGCATACAGGAGTGGTTAAAGAGTTGC TAGAGAAAGATCCAAGCTTACTAGACATGGCTAAATCAAATGGCAAAAATGCATTGCATCTTGCTGCGAGGCAGGGGTATGTAGACATTGTGAGGGCATT GCTTGAAAGAGATCCTCAGATAGCTCGCAGGACGGACAAGAAGGGCCAAACTGCATTACACATGGCTGTTAAAGGAGTTAGCTCAGAGGTTGTCAGATTG CTTCTTTGTGCCGATGCAGCCATTGTCATGCTCCCTGACCGCCATGGTAACACCGCTTTGCACGTTGCCACCAGGAAGAAGCGAGTTGAGATAGTACATG AACTGTTGTATCTACCAGACACAAACGTGAATGCACTAACAAGAGACCACAAAACAGCAGTAGACATAGCCGAGGGGCTTCCCTTATCGGAAGAAATCTC GGAGATAAAAGAATCCCTATACCGTCACGGCGCTCTCAAAGCCAACGACCTCAACCAACCACGCGACGAGCTCCGCCACACAGTCACCGAAATCAAGAAA GAAGTCCACATCCAGCTCGAACAAACCCGCAAGACCAACAGGAACGTCGACGGCATTGCCAAGGAGCTCCGCCGCCTCCACCGTGAAGGGATCAACAACG CCACCAACTCAGTCACCGTCGTGGCCGTCCTCTTCGCCACCGTGGCCTTCGCCGCTATCTTCACCGTGCCCGGAGGCGACGACAACTACGGGACGGCGGT GGTGGTGAGCTCGCCGTCGTTCAAGGTGTTTTTCATATTCAACGCGGTGGCGCTGTTCACGTCGCTGGCAGTGGTGGTGGTGCAAATCACGATCGTGAGG GGGGAGACGAAGTCGGCGCAGCGGGTGGTGGAGGTGATCAACAAGCTGATGTGGCTGGCGTCGGTGTGCACGACGGGTGCGTTCATATCGTCGGCGTACA TCGTGGTGGGGCGGCGGAATCGGTGGGCGGCGATCTTGATCACAGTGATCGGTGGGGTGACGATGGCGGGGGTATTGGGGACGATGACATTTTATGTAAT GAAGTCAAGGAGGATAAGGCGGAAGAAGAGGAGGGAGAAGAGTAGGATCCATGGGAATGGAGCTCCGTCTTCGTCTAGGATTTCGGATTCTGAGACGGAA GTCAATCCCATTTATGCTCTTTGA
AA sequence Show only first row Show all	>Lus10015037 pacid=23171531 polypeptide=Lus10015037 locus=Lus10015037.g ID=Lus10015037.BGIv1.0 annot-version=v1.0 MRTDEGNERDLEKGLFFRSTRSSPNLFSDASSFTSPGPPSPSSTPRGTLVLSNSGKALLVSNSNKSLGISNSGKRYDRKKYVKQVTGRHNDTELHLAAQR GDLASVRHMLDEVSAQMMGTLGGADFDAEVAEIRSAVVNEVNELGETALFIAAEKGHLHIVRELLQFTSKASIALKNKAGFDALHIAASQGHQEIVQVLL EVDPTLSKTVGQSNASPLVSAAAKGHTGVVKELLEKDPSLLDMAKSNGKNALHLAARQGYVDIVRALLERDPQIARRTDKKGQTALHMAVKGVSSEVVRL LLCADAAIVMLPDRHGNTALHVATRKKRVEIVHELLYLPDTNVNALTRDHKTAVDIAEGLPLSEEISEIKESLYRHGALKANDLNQPRDELRHTVTEIKK EVHIQLEQTRKTNRNVDGIAKELRRLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDDNYGTAVVVSSPSFKVFFIFNAVALFTSLAVVVVQITIVR GETKSAQRVVEVINKLMWLASVCTTGAFISSAYIVVGRRNRWAAILITVIGGVTMAGVLGTMTFYVMKSRRIRRKKRREKSRIHGNGAPSSSRISDSETE VNPIYAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09550			Ankyrin repeat family protein ...		Lus10015037 [exp]	0	1
AT3G24630			unknown protein		Lus10011100 [exp]	1.0	0.8864
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10012781 [exp]	4.0	0.8153
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	7.7	0.8105
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	9.9	0.8166
AT1G20823			RING/U-box superfamily protein...		Lus10016040 [exp]	10.2	0.8236
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10007898 [exp]	13.4	0.7988
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	15.5	0.8088
AT5G48500			unknown protein		Lus10009584 [exp]	19.4	0.8082
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	20.1	0.7939
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	21.2	0.7964

Compare expression of checked genes

Lus10015037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.