Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53520 718 / 0 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT3G62830 585 / 0 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 574 / 0 UXS4 UDP-xylose synthase 4 (.1.2) AT2G28760 459 / 8e-162 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 457 / 4e-161 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 454 / 6e-160 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G27860 107 / 2e-25 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT1G08200 105 / 1e-24 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT5G28840 103 / 4e-24 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT1G53500 103 / 2e-23 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024436 [exp] 761 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10025293 [exp] 737 / 0 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10030368 [exp] 585 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 582 / 0 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10006510 [exp] 571 / 0 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10037499 [exp] 499 / 2e-176 AT3G62830 551 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10005155 [exp] 465 / 4e-164 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10001707 [exp] 465 / 6e-164 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005450 [exp] 461 / 2e-162 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080500 [exp] 733 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 704 / 0 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.002G204400 [exp] 585 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 582 / 0 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G053100 [exp] 466 / 1e-164 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200 [exp] 466 / 2e-164 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 462 / 5e-163 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.005G053000 [exp] 108 / 7e-26 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.004G189900 [exp] 104 / 2e-24 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.013G040600 [exp] 103 / 2e-24 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10015038 pacid=23171492 polypeptide=Lus10015038 locus=Lus10015038.g ID=Lus10015038.BGIv1.0 annot-version=v1.0 ATGAAACAGTTGCACAAGCAAGCCAGTGTTAATTACCGCCGAGATGAGGAAATGCCTGCAACTTACTCGCCACCGAAGACTCTCAAGCACCCTAGATCTC TCCCAAGATCCATCAACTACCTCTTCCGCGAGCAGCGCCTCCTTTTTGTTCTCGTCGGAATTCTCATCGGTTCCACTTTCTTCATTCTTCAGCCCACTCT GATCTCTCGGATTGGTCCTTCAGAAACCCATTCTGTCGTTGGATCTTCTGTTCAAGCCTCCAATCGAGGTGGATCTTCTGGATTTTTTCAGAGAAGGTTT GTCTTCGGTCGCGTACCGGCGGATCTAGGCCGCCGGAGGTTGAGAATTGTGGTCACCGGTGGAGCTGGATTCGTCGGGAGCCATCTCGTCGATAAGCTGA TTGCCCGCGGTGATGAGGTAATTGTGATTGATAATTTCTTCACGGGAAGGAAGGATAATTTGGTTCATCTATTTGGAAATTCAAGGTTTGAGCTTATTCG TCACGACGTTGTCGAGCCTATACTGTTGGAGGTAGATCAAATCTATCACTTGGCTTGTCCTGCGTCTCCAGTTCATTACAAGTACAATCCGACCAATGTA ATGGGAACGTTGAATATGTTGGGGCTTGCCAAGAGAGTAGGTGCCAGGTTTCTGCTGACAAGTACCAGTGAGGTCTACGGAGACCCTCTTGAGCATCCAC AGAAGGAGACATATTGGGGAAATGTTAATCCAATTGGTGAGAGGAGCTGTTATGATGAGGGAAAACGAACAGCAGAAACATTAGCCATGGATTACCACCG AGGTGCTGGTGTTGAGGTGCGTATTGCTCGCATTTTTAACACCTACGGACCTCGCATGTGTTTGGATGATGGACGTGTTGTGAGCAATTTTGTGGCCCAG ACTATCCGTAAACAACCAATGACTGTTTATGGTGATGGTAAACAAACGAGGAGCTTCCAATATGTTTCTGACTTGGTAGAGGGATTGGTAGCACTGATGG AAGGTGAACATGTTGGCCCATTCAATCTTGGCAATCCAGGAGAGTTCACCATGCTTGAGCTCGCTGAGGTTGTGAAAGTAGTAATTGATCCAAGCGCGAC AATAGAGTTCAGGCCTAATACCGCAGATGACCCGCATAAGAGGAAACCTGACATCAGCAAAGCAAAAGAACTCCTCAACTGGGAGCCTAAAATCTCGCTG AGAGATGGATTGCCTCTTATGGTGAGCGACTTCAGGAATCGCATCCTCAATGAAGATGAAGGGAAAGGGGTTTGA
AA sequence Show only first row Show all	>Lus10015038 pacid=23171492 polypeptide=Lus10015038 locus=Lus10015038.g ID=Lus10015038.BGIv1.0 annot-version=v1.0 MKQLHKQASVNYRRDEEMPATYSPPKTLKHPRSLPRSINYLFREQRLLFVLVGILIGSTFFILQPTLISRIGPSETHSVVGSSVQASNRGGSSGFFQRRF VFGRVPADLGRRRLRIVVTGGAGFVGSHLVDKLIARGDEVIVIDNFFTGRKDNLVHLFGNSRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPTNV MGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQ TIRKQPMTVYGDGKQTRSFQYVSDLVEGLVALMEGEHVGPFNLGNPGEFTMLELAEVVKVVIDPSATIEFRPNTADDPHKRKPDISKAKELLNWEPKISL RDGLPLMVSDFRNRILNEDEGKGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10015038 [exp]	0	1
AT1G26300			BSD domain-containing protein ...		Lus10036831 [exp]	7.3	0.8631
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	8.1	0.9065
AT3G24240			Leucine-rich repeat receptor-l...		Lus10011756 [exp]	8.1	0.8890
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	8.3	0.9011
AT3G12070		AtRGTB2	RAB geranylgeranyl transferase...		Lus10039714 [exp]	10.6	0.8822
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	11.4	0.9021
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	12.8	0.8951
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	15.0	0.8625
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	19.9	0.9010
AT1G71710			DNAse I-like superfamily prote...		Lus10028727 [exp]	20.8	0.8688

Compare expression of checked genes

Lus10015038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.