Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53490 91 / 2e-23 unknown protein AT5G02720 68 / 3e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003989 [exp] 203 / 3e-67 AT3G53490 215 / 1e-70 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G081900 [exp] 124 / 3e-36 AT3G53490 196 / 4e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015041 pacid=23171494 polypeptide=Lus10015041 locus=Lus10015041.g ID=Lus10015041.BGIv1.0 annot-version=v1.0 ATGACCAAGAAATGCAAGCGCTGTGGATTCTACGAGGAGGATACCTTCAAATCAGATGATGTATATGAGGAATGGGAATTTTGTCCTTCCGATTTTGTGG ATTCTGATGGCACGTATAAGCGGGGCAAGAAGGATGCATACGATGCTACCTTTCTTTGCAAACAGTGTGTTACTCTGCCAGATTTGAACGGCAACTCTGA CGCACCTCGCAAAAGGAAAGGAATGCATGTCGTTGTGATTATACTAATCAGCACTCTAGTTTCGACTGTGTTGATCCTGGGGTCAATTCTAGCATACAAG TACTGGCTAAAGAAGAGGAGAGAGCAAGAACAAGCAAGGTTTCTGAAGCTTTTCGAAGATGGCGACGAAATCGAAGATGATTTGGAACTGGATACAACAA TTTAG
AA sequence Show only first row Show all	>Lus10015041 pacid=23171494 polypeptide=Lus10015041 locus=Lus10015041.g ID=Lus10015041.BGIv1.0 annot-version=v1.0 MTKKCKRCGFYEEDTFKSDDVYEEWEFCPSDFVDSDGTYKRGKKDAYDATFLCKQCVTLPDLNGNSDAPRKRKGMHVVVIILISTLVSTVLILGSILAYK YWLKKRREQEQARFLKLFEDGDEIEDDLELDTTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53490			unknown protein		Lus10015041 [exp]	0	1
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	1.0	0.9626
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	4.0	0.9377
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	5.1	0.9438
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	5.5	0.9365
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10038219 [exp]	7.5	0.9386
AT5G41800			Transmembrane amino acid trans...		Lus10003903 [exp]	7.9	0.9255
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	8.9	0.9301
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	11.9	0.9141
AT5G11680			unknown protein		Lus10020200 [exp]	13.6	0.9337
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	15.5	0.9364

Compare expression of checked genes

Lus10015041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.