Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002071 [exp] 660 / 0 ND / Lus10010826 [exp] 606 / 0 ND / Lus10010604 [exp] 601 / 0 ND / Lus10003781 [exp] 593 / 0 ND / Lus10024215 [exp] 584 / 0 ND / Lus10039674 [exp] 575 / 0 ND / Lus10033874 [exp] 555 / 0 ND / Lus10021684 [exp] 546 / 0 ND / Lus10021528 [exp] 535 / 0 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015042 pacid=23171521 polypeptide=Lus10015042 locus=Lus10015042.g ID=Lus10015042.BGIv1.0 annot-version=v1.0 ATGAACTCATACAATCACATGCTAGTTGCTCTCGCTCGGAGTCATGTTTTCTTTGTCAATGATCACATGCGCAGCTGTGATCATCAAGCCATCTATCTTG AGTTCTTTGCTAATCGTCCTATTCTCCCCACCTCACATATCGATCCCACTGCCTTCGATCGGTACGGTCTCAATCCATCTGCATTGATTGGTAATCTAGG GTGGGGTTCCCTTACTCAAAATCAGCGCTACCATTTTTTTCCTGCTGTTGTACGTCAATTCTATGCCAACTTGCAATTAGAAGGCACTCTTCAATGTGGA CGTTTCAGTACCATTGTAAGTGGTTATCGCATTATAGTTACTCCTCGTCTCCTTTCCTCAGTCCTAGGCATTCCCTCCGGAGGGATGTCAATCTTTGATG AGTCTGACTTGCGTAAGGTTCCGTTTGATGCATCTGTCGTGCTTGCTCGCTGGACCAATGCTCCTTCGACAGCTCGTCCGTTCTCGATTATTTCTATGCT TCTTGACTATCTCAAGGTCTTACACTTCTTTATCTCTCGGGTTTTCCTTCCTCGCTCCGTTGGGAAATTCCTGGTCACAAGTTTGGACACCTGGATTATG CACTGTGCTATCTTCAACTTTCAAACTGACTTTAGCTGCTTGATGTTTGGTGCAATGGTTTCTTATGGAAATCGGACTTTTCCTGGTGATCTTCCTTTTG GTTCTGCCATTTCCTATCTGCTCTATGCCCTTGGTGTTCCAGTGCACGGGAGCCTTCTGATTGAATCTCCCCTTCACAATCTTCGTCCTAGTCAGGTTCT TCGGGAAGTTGGTTGGGATCATCTTCAGCCTGCCTCTGGCTCAGGGGGAGAAGCTCTTCATGATCTTAACCTATCTGACGACGAGGTTGATGATCTTGCT GCTGAGATGGAACGGAACTTGGAGATCCAGAGTAGTGTTGACGCTGCAATTGCCGATGGTCTGTCTGTGTCTAGTCAATCACCAGATAGCAATGTTTAG
AA sequence Show only first row Show all	>Lus10015042 pacid=23171521 polypeptide=Lus10015042 locus=Lus10015042.g ID=Lus10015042.BGIv1.0 annot-version=v1.0 MNSYNHMLVALARSHVFFVNDHMRSCDHQAIYLEFFANRPILPTSHIDPTAFDRYGLNPSALIGNLGWGSLTQNQRYHFFPAVVRQFYANLQLEGTLQCG RFSTIVSGYRIIVTPRLLSSVLGIPSGGMSIFDESDLRKVPFDASVVLARWTNAPSTARPFSIISMLLDYLKVLHFFISRVFLPRSVGKFLVTSLDTWIM HCAIFNFQTDFSCLMFGAMVSYGNRTFPGDLPFGSAISYLLYALGVPVHGSLLIESPLHNLRPSQVLREVGWDHLQPASGSGGEALHDLNLSDDEVDDLA AEMERNLEIQSSVDAAIADGLSVSSQSPDSNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015042 [exp]	0	1
					Lus10002071 [exp]	1.0	0.9391
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020147 [exp]	3.0	0.7377
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10001112 [exp]	3.5	0.5882
AT4G14103			F-box/RNI-like superfamily pro...		Lus10020634 [exp]	3.5	0.7451
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10020636 [exp]	7.3	0.6748
AT4G14103			F-box/RNI-like superfamily pro...		Lus10020635 [exp]	8.9	0.7082
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Lus10018959 [exp]	9.9	0.5937
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	11.8	0.7103
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020148 [exp]	15.7	0.6525
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10006027 [exp]	16.7	0.5855

Compare expression of checked genes

Lus10015042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.