Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02740 178 / 4e-56 Ribosomal protein S24e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003991 [exp] 380 / 7e-136 AT5G02740 181 / 2e-57 Ribosomal protein S24e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G215800 [exp] 160 / 7e-49 AT5G02740 139 / 2e-40 Ribosomal protein S24e family protein (.1.2) Potri.012G089800 [exp] 38 / 0.0005 AT5G02740 43 / 4e-06 Ribosomal protein S24e family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015045 pacid=23171535 polypeptide=Lus10015045 locus=Lus10015045.g ID=Lus10015045.BGIv1.0 annot-version=v1.0 ATGAGTCTCCTTAGAAACGGAATCCGAGCGACTTTCCCGCTTCGGACATCAACTCCGAGACTTGGATCCCCCTTGTTCCTCCGAGATTCCGCCAACCATT TCTTCACCGAAGCAGGGCAGCCTCCTTCCCCGCCGGAAGCCTCATCCGTCGATCCCTTCCTTCAAACACCAGGAGTTTCTTATGGGAGATTGTTCGGTGG TGGGAGGCATACATTGAAGACGGACATTATGAATCTGCTGCAGGGTTGTAATTTGGGTATTGAGGATATCAAGTTCAGTTACACTCGTGGATTTACTCCT GTTGCAGTGCTGTTACAATTTCCTTCCCATCAGGCCTACGACAACGCGTTCAAGGTCCTTGCAAGGAAGGGCCGTGTATACAGGTTGCAAAGGGCTGAAC GTGCCGAGTGGGATCTTCAAACACCATACTACGGGAAAACAGTTCTGGTGCAAGGAGTTCCAAACAATGCAATTCCAGAAGATATCGAATGCTTTTTGTC TGGCTATGATTTTGATCCGGTCTCCATTCAGTTCATAAGACAGGGGATTCCACCAAACTCTATAAGAAGCGCTGTTGTGAGATTTGAGTCTTCGGTGCAG GCAATGAATGCATTCATCTCTAAGAATGGAGGATTTTGTCTCAACCATAGGGTTTGGATGCGAGTTGTCCTGTAA
AA sequence Show only first row Show all	>Lus10015045 pacid=23171535 polypeptide=Lus10015045 locus=Lus10015045.g ID=Lus10015045.BGIv1.0 annot-version=v1.0 MSLLRNGIRATFPLRTSTPRLGSPLFLRDSANHFFTEAGQPPSPPEASSVDPFLQTPGVSYGRLFGGGRHTLKTDIMNLLQGCNLGIEDIKFSYTRGFTP VAVLLQFPSHQAYDNAFKVLARKGRVYRLQRAERAEWDLQTPYYGKTVLVQGVPNNAIPEDIECFLSGYDFDPVSIQFIRQGIPPNSIRSAVVRFESSVQ AMNAFISKNGGFCLNHRVWMRVVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	0	1
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	3.3	0.8723
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	4.2	0.8674
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	6.0	0.8644
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	6.3	0.8311
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	7.3	0.8530
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	7.7	0.8374
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10003197 [exp]	7.9	0.8011
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	10.8	0.8598
AT1G08220			unknown protein		Lus10005355 [exp]	11.0	0.8498
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	16.1	0.8226

Compare expression of checked genes

Lus10015045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.