Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02750 119 / 2e-31 SGR9 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) AT5G64920 55 / 2e-08 CIP8 COP1-interacting protein 8 (.1) AT5G08139 55 / 2e-08 RING/U-box superfamily protein (.1) AT5G59550 54 / 4e-08 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G15820 54 / 6e-08 RING/U-box superfamily protein (.1) AT3G46620 54 / 8e-08 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G02340 53 / 9e-08 RING/U-box superfamily protein (.1) AT5G01980 52 / 2e-07 RING/U-box superfamily protein (.1) AT3G19950 52 / 2e-07 RING/U-box superfamily protein (.1) AT3G10815 50 / 3e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003992 [exp] 268 / 2e-89 AT5G02750 209 / 1e-66 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Lus10031422 [exp] 57 / 6e-09 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10023235 [exp] 52 / 2e-07 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10008874 [exp] 52 / 4e-07 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10017383 [exp] 48 / 6e-07 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10010179 [exp] 50 / 1e-06 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10000023 [exp] 48 / 2e-06 AT5G59550 159 / 5e-47 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037170 [exp] 48 / 2e-06 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10040278 [exp] 48 / 2e-06 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082500 [exp] 153 / 2e-44 AT5G02750 176 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Potri.006G216200 [exp] 152 / 3e-44 AT5G02750 175 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Potri.001G103900 [exp] 55 / 7e-09 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.001G231000 [exp] 54 / 2e-08 AT3G60080 100 / 3e-25 RING/U-box superfamily protein (.1) Potri.006G087800 [exp] 54 / 4e-08 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.015G047900 [exp] 54 / 5e-08 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.012G065300 [exp] 53 / 9e-08 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 52 / 2e-07 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 51 / 4e-07 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 50 / 6e-07 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10015046 pacid=23171516 polypeptide=Lus10015046 locus=Lus10015046.g ID=Lus10015046.BGIv1.0 annot-version=v1.0 ATGGAATTCCAACCATCACCAACTACACATGATCATCAACACCATCACCATCATCTAGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACAAGAAGGA TAATGGAAGCACTCTCCACTCTCACCACTCAATCAACAACCAACCTCACCTCCTCCATCCTCTCCTTAACCGACCACCGCCGCCGACGACTCTCAACCAT CCTCACCTCCCCAACAGCCTTCTCCCTCTCCCTATCACACCTACACTCGCTATCCCTCCCTCAAAAAACCCTCTTAATCTCCAAACTCCTCCTCTCATCC CTCCACCTCCTCACCTCCCACTTCCCTATCCCTCCACCGCCGCCACCTTCCTCCTCCTCCACCACCCACCGTGACCTTGACGCTGCCGTCCTCCTCCTCC ACATATGCGACCTTCTCCACCGTCACCCGGACGTCCTCGACACCACCCCCTACGAGGACTGGCGGGTCGCCCTCACCGCCCATTTCGCCGACGTCGTTCT GACGTCAGCCACCATCGGAGTTTACTACGGCGGCGTGTTGGTGCCGTTTGTGGAGTCGGTGGTGAGGTGCTGGAGGTTTTTCCTTAGTGATGAATTTGTG TGTGGAATGGTGGAGGGGGAGACGCCGGCGGATCCTACGGCGGGGGGGGGGGGGGGGNNNNNNNNNNNNCCGTCGGTGAGTGGTGGAGGAGAGTGTGTGG TGTGTAAGGAGGAGATGGAGGAAGGGAGGGAGGTGTGTGAGATGCCGTGTGGGCATTTGTTTCATTGGAGTTGTATATTGCGGTGGCTTAGCAACCGGAA TACTTGTCCAACTTGCCGCTTTCAGCTCCCCACGGAGAATGTTCACGGTGAGATCCGGCGGCTCTGGGGGTTTCTCGTTAAGGCTGCTAGTGGGGCCCCC GCTCTATTAACTAGTCATTAA
AA sequence Show only first row Show all	>Lus10015046 pacid=23171516 polypeptide=Lus10015046 locus=Lus10015046.g ID=Lus10015046.BGIv1.0 annot-version=v1.0 MEFQPSPTTHDHQHHHHHLVEEEEEEEEEETRRIMEALSTLTTQSTTNLTSSILSLTDHRRRRLSTILTSPTAFSLSLSHLHSLSLPQKTLLISKLLLSS LHLLTSHFPIPPPPPPSSSSTTHRDLDAAVLLLHICDLLHRHPDVLDTTPYEDWRVALTAHFADVVLTSATIGVYYGGVLVPFVESVVRCWRFFLSDEFV CGMVEGETPADPTAGGGGGXXXXPSVSGGGECVVCKEEMEEGREVCEMPCGHLFHWSCILRWLSNRNTCPTCRFQLPTENVHGEIRRLWGFLVKAASGAP ALLTSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10015046 [exp]	0	1
AT4G21500			unknown protein		Lus10011256 [exp]	2.0	0.8789
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	2.6	0.8851
AT5G24090		ATCHIA	chitinase A (.1)		Lus10010137 [exp]	3.5	0.8759
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040707 [exp]	4.6	0.8569
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	5.5	0.8782
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	7.7	0.8587
					Lus10018215 [exp]	9.2	0.8648
AT4G21500			unknown protein		Lus10018431 [exp]	11.0	0.7958
					Lus10005747 [exp]	15.1	0.8345
AT4G35150			O-methyltransferase family pro...		Lus10006691 [exp]	15.6	0.8368

Compare expression of checked genes

Lus10015046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.