Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 74 / 4e-14 F-box family protein (.1) AT1G20790 66 / 9e-12 F-box family protein (.1) AT1G20940 61 / 6e-10 F-box family protein (.1) AT5G49610 57 / 1e-08 F-box family protein (.1) AT3G22350 57 / 1e-08 F-box and associated interaction domains-containing protein (.1.2) AT1G15680 56 / 2e-08 F-box family protein (.1) AT1G20795 54 / 6e-08 F-box family protein (.1) AT3G23950 53 / 2e-07 F-box family protein (.1) AT1G20360 52 / 2e-07 F-box family protein (.1) AT3G47030 51 / 6e-07 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024021 [exp] 82 / 8e-17 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10041733 [exp] 79 / 1e-15 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10014320 [exp] 78 / 1e-15 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10037802 [exp] 69 / 2e-12 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10017086 [exp] 66 / 2e-11 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10042989 [exp] 54 / 2e-08 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10013987 [exp] 55 / 9e-08 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10028682 [exp] 52 / 4e-07 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10013872 [exp] 50 / 2e-06 AT3G06240 101 / 2e-23 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G028500 [exp] 284 / 3e-93 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.007G027300 [exp] 86 / 2e-18 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.010G254000 [exp] 85 / 8e-18 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.013G067800 [exp] 84 / 1e-17 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.007G027200 [exp] 77 / 3e-15 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.018G132800 [exp] 76 / 6e-15 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.003G215900 [exp] 76 / 6e-15 AT5G07610 101 / 2e-23 F-box family protein (.1) Potri.005G254633 [exp] 75 / 1e-14 AT4G09190 79 / 4e-16 F-box and associated interaction domains-containing protein (.1) Potri.005G254500 [exp] 75 / 1e-14 AT4G09190 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Potri.005G124500 [exp] 71 / 4e-13 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10015048 pacid=23171525 polypeptide=Lus10015048 locus=Lus10015048.g ID=Lus10015048.BGIv1.0 annot-version=v1.0 ATGGAGAAACTCAGACGTCTAAATCGCGACATTTCCGATATGGTACTATCAAAATTGGAAATTAGGGATTTGCTGCAGATGCAATGCGTTTCCAGGGACT GGTGCTCTCTCATATCCGACCGTTCTTTCAAGCTGCACCATTCGCTGGAAACTCAGCCGAAGCTATCTGGATTCTTCTTCCAGCCGAAATCTCGATGGGC AACCAATGTTCTCTCAGATGTAAGTTATATTTCTATGCAAAGGGGAGTAGCAAAGCTTCTTAACAGCACTCCCGACTTCATTCCAGAGAATTCCCTTATC ATTTGTTCGTGTAATGGGTTGCTTTGTTGTAAGGGTGTTTTTGGTGGTATCAATAGATTGGCTATTCATGTAGGAAACCCACTGACTAGGGAATGGATAG AACTAGATTGGACCGGGAATGAGCTAGTGGTTGGGATTGGTATGACTTTTGATCCTTGTGTTAATATCAGTGATGGAAAAACAAACTTCAAGGTGGTTGT ATTGTCAGAGTCGGCTGATGATGACGAAAAGCTTTCATTTGATGTATATTCTTCTGAGACTGGGAATTGGAAGCGATCAGATGAAACATGCACAACGGCC GCTGAGTTTGGTGACACTAAATCCGTGTCTGTGAAAGGGGTACTGTATTGGTTAAGCGATGACGGTGCAGTTCTCGCATTTGATGTAGAAACAGAAATGG CTTTTATGATATCAGCCCCAATCCCAGCTTCTGAATTCGAGTTTAAGCCCATGACTTGTATCGGGGAATCCAATGGGGTGCTGCAATATATAATGGCAGA GAGTATGGGAATTCTCGTTTGGGGGCTTGATGGTCCTTGTTATGAGCAGACATGGTCACTTGGATTCAGGAAATCATTGGATGATATAGAGAAGGAACAT GCTGGGTTTGAGCTATGTCTAGGAGACAGAATAAGGTATCAGAAGCTAAATGTAGAGTCATGGATGGATCTTATGGCATTCATAGATGGGATTCTGATGT TTAGGGCCGGGAACACTGTCTTCTCGTACAACTTGGTAACTGATGGTATGAACCGTGTTGCTCATGTGTCGGAGTTGGGTACCAGATCCTTGTTCAATCC TACGGTGCTTCCATACTCCATGAGTTTGGTTCCTTTAAGTCAGCCATGA
AA sequence Show only first row Show all	>Lus10015048 pacid=23171525 polypeptide=Lus10015048 locus=Lus10015048.g ID=Lus10015048.BGIv1.0 annot-version=v1.0 MEKLRRLNRDISDMVLSKLEIRDLLQMQCVSRDWCSLISDRSFKLHHSLETQPKLSGFFFQPKSRWATNVLSDVSYISMQRGVAKLLNSTPDFIPENSLI ICSCNGLLCCKGVFGGINRLAIHVGNPLTREWIELDWTGNELVVGIGMTFDPCVNISDGKTNFKVVVLSESADDDEKLSFDVYSSETGNWKRSDETCTTA AEFGDTKSVSVKGVLYWLSDDGAVLAFDVETEMAFMISAPIPASEFEFKPMTCIGESNGVLQYIMAESMGILVWGLDGPCYEQTWSLGFRKSLDDIEKEH AGFELCLGDRIRYQKLNVESWMDLMAFIDGILMFRAGNTVFSYNLVTDGMNRVAHVSELGTRSLFNPTVLPYSMSLVPLSQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07610			F-box family protein (.1)		Lus10015048 [exp]	0	1
AT5G58610			PHD finger transcription facto...		Lus10003352 [exp]	2.0	0.7991
AT5G06430			Thioredoxin superfamily protei...		Lus10032763 [exp]	6.3	0.7711
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	13.1	0.7706
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	13.2	0.7758
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	13.9	0.7829
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10032522 [exp]	16.9	0.7939
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	19.6	0.7653
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	20.5	0.7455
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	24.6	0.7657
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	27.5	0.7854

Compare expression of checked genes

Lus10015048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.