Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02790 322 / 3e-112 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G02780 296 / 4e-102 GSTL1 glutathione transferase lambda 1 (.1.2) AT3G55040 297 / 1e-101 GSTL2 glutathione transferase lambda 2 (.1) AT1G17170 54 / 2e-08 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT1G53680 54 / 2e-08 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78320 53 / 2e-08 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT1G69920 53 / 4e-08 ATGSTU12 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, glutathione S-transferase TAU 12 (.1) AT2G29460 52 / 6e-08 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT1G78380 51 / 2e-07 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G27130 50 / 3e-07 GST12, ATGSTU13 GLUTATHIONE S-TRANSFERASE 12, glutathione S-transferase tau 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003994 [exp] 348 / 1e-122 AT5G02790 324 / 5e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10040347 [exp] 277 / 3e-93 AT3G55040 290 / 8e-98 glutathione transferase lambda 2 (.1) Lus10019895 [exp] 277 / 6e-90 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10014022 [exp] 67 / 1e-12 AT5G12130 402 / 7e-137 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10030362 [exp] 62 / 3e-11 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) Lus10005592 [exp] 61 / 8e-11 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10042468 [exp] 59 / 2e-10 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 59 / 3e-10 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026198 [exp] 58 / 4e-10 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G083500 [exp] 376 / 8e-134 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.006G133500 [exp] 366 / 1e-129 AT5G02790 325 / 1e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.008G046800 [exp] 324 / 3e-112 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1) Potri.010G214800 [exp] 98 / 2e-25 AT5G02780 98 / 6e-26 glutathione transferase lambda 1 (.1.2) Potri.011G114000 [exp] 61 / 5e-11 AT1G17180 265 / 2e-90 glutathione S-transferase TAU 25 (.1) Potri.001G436500 [exp] 61 / 6e-11 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437200 [exp] 59 / 1e-10 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113100 [exp] 59 / 2e-10 AT1G17180 268 / 2e-91 glutathione S-transferase TAU 25 (.1) Potri.001G436600 [exp] 59 / 2e-10 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113000 [exp] 58 / 5e-10 AT1G78380 259 / 3e-88 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015049 pacid=23171544 polypeptide=Lus10015049 locus=Lus10015049.g ID=Lus10015049.BGIv1.0 annot-version=v1.0 ATGGCTGCCACACTTCTTGACAAATCCGTGGCGGAAGACTTGCCGCCGGTGCTGGATGCGTCGTCGGAGCAGCCCCCACTCTTCGATGGAACAACCAGGC TGTACACGAACTACCAGTGTCCTTTTGCTCAGCGGACATGGATCGCTAGGAATTTCAAGGGTTTGCAAGACAAAATAAAGTTAGTTCCTCTGGACCTTCA GAATAGGCCTGGTTGGTATCCGGAGAAAGTTTATGCCGGAAATAAGGTGCCAGCACTCGAACACAAGGGGAAAATCATCGGAGAGAGCTTGGATTTGGTC AAGTACCTAGATACCAATTTCGAAGGGCCATCTCTTCTTCCTGATGATCCTGCCAAGAAGCAGTTTGCTGAAGAGATGTTTACATACACTGATACATTCA ATGGAAAGGTGTTTACTGCTTTCAAGGGAGATGCGGTGAAGGAAGCTGGCCCTGTTCTGGATTATATGGAAGAAGCACTTTCGAAATTCAATGATGGGCT GTTCTTTCTCGGTCAGTTCAGTATGGTGGACATCGCCTACATTCCCTTTGTTGAAAGGTTCCAGATCTTCTTCTCGGAAGTGTTCAAGCATGATATTACC CAAGGGAGGCCTAAACTTGCTGCTTGGTTTGAGGAGATGAACAAAGTTGAAGCTTACAAGCAGACGAAACTGAAAGATCCAAAACAGTTTGTGGAGCTCT ACAGCAAGCGGTTCTTGGGTAAGTAA
AA sequence Show only first row Show all	>Lus10015049 pacid=23171544 polypeptide=Lus10015049 locus=Lus10015049.g ID=Lus10015049.BGIv1.0 annot-version=v1.0 MAATLLDKSVAEDLPPVLDASSEQPPLFDGTTRLYTNYQCPFAQRTWIARNFKGLQDKIKLVPLDLQNRPGWYPEKVYAGNKVPALEHKGKIIGESLDLV KYLDTNFEGPSLLPDDPAKKQFAEEMFTYTDTFNGKVFTAFKGDAVKEAGPVLDYMEEALSKFNDGLFFLGQFSMVDIAYIPFVERFQIFFSEVFKHDIT QGRPKLAAWFEEMNKVEAYKQTKLKDPKQFVELYSKRFLGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	0	1
AT4G02920			unknown protein		Lus10008160 [exp]	2.0	0.9864
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	3.2	0.9869
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10007972 [exp]	3.9	0.9850
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10035241 [exp]	4.9	0.9792
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10014105 [exp]	5.8	0.9780
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10009988 [exp]	6.0	0.9829
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	6.0	0.9841
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	6.3	0.9820
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10026783 [exp]	7.2	0.9788
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	7.9	0.9804

Compare expression of checked genes

Lus10015049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.