Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02800 358 / 3e-124 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G18610 362 / 6e-124 Protein kinase superfamily protein (.1.2) AT5G13160 344 / 1e-117 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT2G28590 333 / 7e-114 Protein kinase superfamily protein (.1) AT1G07870 329 / 3e-112 Protein kinase superfamily protein (.1.2) AT3G24790 322 / 3e-110 Protein kinase superfamily protein (.1) AT3G07070 322 / 2e-109 Protein kinase superfamily protein (.1) AT3G20530 319 / 9e-109 Protein kinase superfamily protein (.1) AT1G20650 318 / 3e-108 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT4G13190 311 / 2e-105 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019897 [exp] 374 / 1e-130 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 373 / 7e-130 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014019 [exp] 374 / 3e-129 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10023473 [exp] 364 / 2e-126 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 364 / 4e-126 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 363 / 1e-125 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 365 / 3e-125 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 365 / 4e-125 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 348 / 3e-119 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133300 [exp] 375 / 1e-130 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 368 / 4e-128 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 367 / 8e-128 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 360 / 4e-123 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 360 / 5e-123 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 349 / 2e-119 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 343 / 6e-117 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 337 / 1e-115 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G137000 [exp] 330 / 7e-113 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.001G234100 [exp] 328 / 4e-112 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015051 pacid=23171515 polypeptide=Lus10015051 locus=Lus10015051.g ID=Lus10015051.BGIv1.0 annot-version=v1.0 ATGGATGGGATTGCAGCAAAGACTTTCACTTTCAGGGAATTGGCCATAGGTACTAACAACTTCAGAAACGAATTTCTTCTGGGCGAAGGAGGCTTTGGTA GGGTTTACAAGGGCCATCTGGCTACCATTAATCAGGTTGTGGCAATTAAGCAACTTGACAGGAATGGTTCACAAGGAAACAGAGAATTCCTAGTTGAAGT TCTGATGTTGAGCCTCCTTCATCATCCCAACCTCGTCAATCTAATCGGATACTGTGCTCACGGAGATCAAAGGCTGCTGGTCTATGAATACATGCCGCTA GGATCTCTGGATGATCACTTACATGACATCGACCTGGATCACCGAGGACTCGATTGGAAGACGAGAATGAAAATTGCGGCAGGAGCAGCGAAAGGACTCG AGCATTTGCACGACAATGTCAAGCCTCCTGTCATCTACAGAGATCTTAAATGCTCAAACATTTTACTGGACGGAGGATACCATCCCAAGTTATCCGATTT CGGGTTGGCTAAACTCGGCCCTGTGGGTGACAACACCCATGTGTCCACTAGAGTCATGGGTACATTCGGGTATTGTGCTCCAAAATACGCAATGACTGGC CAATTGACCTTGAAATCGGATGTTTATAGCTTCGGGGTTGTGTTGTTGGAGATCATTACTGGAAGGAGAGCATCGGTGCGGTGGGCGTGGGTGGTGGTGG GGGGAGGGGGTGTGGGGGGGGGGGGGGGGGTGGGAAGAGAGAGTACATACTGTATACACTTGCATATAATTCAATTATCAATCAAAACCGTATAG
AA sequence Show only first row Show all	>Lus10015051 pacid=23171515 polypeptide=Lus10015051 locus=Lus10015051.g ID=Lus10015051.BGIv1.0 annot-version=v1.0 MDGIAAKTFTFRELAIGTNNFRNEFLLGEGGFGRVYKGHLATINQVVAIKQLDRNGSQGNREFLVEVLMLSLLHHPNLVNLIGYCAHGDQRLLVYEYMPL GSLDDHLHDIDLDHRGLDWKTRMKIAAGAAKGLEHLHDNVKPPVIYRDLKCSNILLDGGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTFGYCAPKYAMTG QLTLKSDVYSFGVVLLEIITGRRASVRWAWVVVGGGGVGGGGGVGRESTYCIHLHIIQLSIKTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18610			Protein kinase superfamily pro...		Lus10015051 [exp]	0	1
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10015050 [exp]	1.0	0.7691
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10003995 [exp]	6.0	0.6682
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	14.3	0.7312
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	17.2	0.7147
AT5G67620			unknown protein		Lus10011549 [exp]	17.7	0.7069
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	18.5	0.7314
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	20.8	0.6494
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10008775 [exp]	24.5	0.6405
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	34.2	0.6905
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	35.2	0.7068

Compare expression of checked genes

Lus10015051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.