Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02820 450 / 8e-159 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) AT1G63990 140 / 1e-38 SPO11-2 sporulation 11-2 (.1) AT3G13170 134 / 3e-36 ATSPO11-1 Spo11/DNA topoisomerase VI, subunit A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003996 [exp] 544 / 0 AT5G02820 720 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10004416 [exp] 91 / 3e-20 AT3G13170 479 / 2e-170 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10032302 [exp] 73 / 4e-15 AT1G63990 253 / 8e-84 sporulation 11-2 (.1) Lus10016612 [exp] 73 / 4e-14 AT3G13170 423 / 7e-145 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10024675 [exp] 68 / 4e-13 AT1G63990 287 / 5e-97 sporulation 11-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132600 [exp] 474 / 4e-168 AT5G02820 700 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.001G366700 [exp] 142 / 3e-39 AT3G13170 499 / 2e-178 Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.001G099100 [exp] 134 / 3e-36 AT1G63990 603 / 0.0 sporulation 11-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04406 [flax] [poplar] TP6A_N Type IIB DNA topoisomerase
Representative CDS sequence Show only first row Show all	>Lus10015052 pacid=23171499 polypeptide=Lus10015052 locus=Lus10015052.g ID=Lus10015052.BGIv1.0 annot-version=v1.0 ATGTCAGACCCTAAGTTGAAGAAGCGCCGCCGACCGGACAATGACTCCGACGCACCTGACCTTCCCTTCAAGAACAGCCTCAAACCTGACTCCGCCATCC TCCAAACCCTAGAAGCTCTGCTAAAATCCACTGTTGCCGCCACCTCCTCCTCCTCCTCCAGGCCCCGATCCCTTTCCGACCTCGCCCTCGCCGCCATGTG TCGCGAGGTCACCGACCAGTCCCCTGCCTCCGTCCAGTCCAACATCGAGTCCTTAATCCTCTCCCTCGCCCACTCCATCCTCTCCGGCAACGGCTTCTCC TTCAACGTCCCCTCACGCGCCGCCACCAACCAGCTCTACGTCCCCGAGCTGGACCGCATCGTGTTAAAAGACAAAAATACCCTCCGCCCTTTCGCCAACA TCTCCTCCGTCCGTAAGTCCACCGTCACCACCAAGATCATCTCCTTGATCCACCAGCTCTGCCTCAAGAACATCCACGTCACCAAGCGAGATCTCTTCTA CACCGACGTCAAGCTCTTCCAGGACCAGACGCAGTCCGACGCTGTCCTTGACGACGTCTCCTGCATCCTCGGATGCACCAGATCTTCCCTCAACGTTGTT GCTGCCGAGAAAGGAGTCGTCGTTGGGAGGCTCATCTTCAGTGACAACGGCGACATGATCGATTGCACCAAGATGGGGATGGGAGGGAAAGCTATTCCTC CCAACATAGATAGAGTTGGGGATATGCAGAGTGATGCGTTGTTCATACTGTTGGTGGAGAAGGATGCAGCTTACATGAGGTTGGCCGAGGATAGATTCTA CAATCGGTTTCCTTGTATCATCGTGACGGCCAAAGGACAGCCAGATGTAGCAACAAGGCTCTTCTTGAGGAAGATGAAGATGGAGTTGAAGCTTCCTGTT TTGGCATTGGTGGATAGTGATCCTTACGGGCTTAAGATCCTATCGGTGCTGCAGCAGCAGGATTGGATTTGA
AA sequence Show only first row Show all	>Lus10015052 pacid=23171499 polypeptide=Lus10015052 locus=Lus10015052.g ID=Lus10015052.BGIv1.0 annot-version=v1.0 MSDPKLKKRRRPDNDSDAPDLPFKNSLKPDSAILQTLEALLKSTVAATSSSSSRPRSLSDLALAAMCREVTDQSPASVQSNIESLILSLAHSILSGNGFS FNVPSRAATNQLYVPELDRIVLKDKNTLRPFANISSVRKSTVTTKIISLIHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCILGCTRSSLNVV AAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPV LALVDSDPYGLKILSVLQQQDWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10015052 [exp]	0	1
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10003996 [exp]	1.0	0.9359
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	7.6	0.9189
AT4G00250	GeBP		DNA-binding storekeeper protei...		Lus10007188 [exp]	8.0	0.8767
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	9.6	0.8964
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10040451 [exp]	11.9	0.9165
AT1G27435			unknown protein		Lus10035173 [exp]	13.0	0.8793
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10011459 [exp]	17.1	0.8872
AT1G63850			BTB/POZ domain-containing prot...		Lus10017511 [exp]	17.5	0.8671
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10002118 [exp]	24.8	0.8896
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10032124 [exp]	27.1	0.8335

Compare expression of checked genes

Lus10015052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.