Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02830 768 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62680 137 / 7e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 135 / 2e-32 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT1G12620 132 / 5e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 132 / 1e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G06710 132 / 3e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 127 / 5e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18900 125 / 2e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT3G53700 125 / 2e-29 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 121 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013894 [exp] 142 / 1e-34 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 138 / 3e-33 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 129 / 2e-30 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026747 [exp] 126 / 2e-29 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040633 [exp] 125 / 3e-29 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 122 / 4e-28 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 119 / 2e-27 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008969 [exp] 119 / 4e-27 AT5G04810 1121 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10003657 [exp] 118 / 4e-27 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132700 [exp] 837 / 0 AT5G02830 892 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 151 / 6e-38 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 136 / 6e-33 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 137 / 7e-33 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.018G037200 [exp] 131 / 1e-31 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.007G123600 [exp] 129 / 2e-30 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 126 / 1e-29 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 123 / 6e-29 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G166200 [exp] 123 / 1e-28 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G066400 [exp] 120 / 8e-28 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015053 pacid=23171509 polypeptide=Lus10015053 locus=Lus10015053.g ID=Lus10015053.BGIv1.0 annot-version=v1.0 ATGAGAGATTTCTTCGTCATCCTCGGTTCATCCTCCTCCATCGTCACTCCTCCGAACCACCCCCACGACGGCCACCGTCACCTCTCCCCAAACCGCAAAC CCACCACTCCCTCAAGGCCCACCTCTCGTCTTCTCGTCCCCAATTCCATCCGTTATCGCCTCTCTTCTCGTCCCAAAACGTCGTCGTTCAAGTACCAAGC CCTCGTAGCCGCCAAGCTCGCCGGAGACGGCCGCCTCAGAGATTTTACCATGATACTGGAGTTCGTGGCCTCTTCGGGAATGGATCCGTTTGATTTCGCC GCGGCACTGAGCCTGAAATCAGTGGGGGAAGGGATTTTGCTGAATCTTCGAGACGGAAATGTGCAGATTGTATTTGAGGTGTTTAGGCAAGTTAAGAAGC TAGGGATTTCACCTTTTGAGCTTTTCGACCAAGTGAACCTGCAGTTGTTCCGGAGAGAATGTGGCCGGATTGCGAAGCGCAAGGAGTTGCGGAGAGCTGT CCAATTTCTGGAGAATCTTGCGGGATTTGGCTTCTCCGTTAGAGACATTACGGAGCCGATGGAAATTGTTAAAATGTGCGTTGATCAACGCGATCCAGAC TTGGCTGTGAGGTATGGTACTATTTGTCAGCCTGATCGTATGCTATTATGCACCATTATCCATGAATTTGGGAAAAGGAAAGATTTAGATTCTGCTTTGA GAGCTTATGAGGCGTTTATTGAGCTCTTGAGGATCCCTAACATGTACATGTACCGCACAATTATTGATGTCTGTGGTATATGTGGGAATTATATGAAGTC CAGGCTTATCTTTGAGGTACTTGGTCCTGACTTGGTGAACATGATTATTCATGACATGCTCAGGCAAAAGATAGTTCCAAATACCTATTTCTTCAACAGT CTCATGAGCGTGAATGCTCATGATTTGACCTATACAATGCACATATATCAAAAGATGCAAGAAGTTGGGGTACAAGCAGATACAGCCTCTTACAACGTTA TCTTGAAAGCTTGTCGTCTTGCTGGAAGAGTTGACGCAGCACAGAACATCTATAACAGAGTAAGACTGATGAAGTCAACATCCGGTCTGAAGTTGGACGT TTTCACTTACTGTACAATAATAAAGGTATTTGCAGATGCAAAATTGTGGGAAATGGCACTGAAAGTTAAAGATGATATGCTATTGTCCGGCGTTACCCCT AACGTGCACACATGGTCAGCACTGCTCAGTGTTTGTGCAAAAGCAGGTCGTGTGAAACTTGCAATTCAGTTATTTGAAGAGATGCTTCAATCAGGTTGCA AGCCAAACACATGGTGCTGTGACATTCTTCTGCATGCTTGTGTCGTGGCTCGCCAGTACGATAGAGCTTTTCGTCTTTTCCAACTTTGGAAGCGGAATGG AGTTCGGCAGACTTTAGGAGAAATTAACAGCAGGGAAACCAATAACATTCCCGAATCTGTCGCTGCATCAGAAATTGTGTCTAATTCACATCATTTGAAC TTCATGAAGAAGTTGCCCTTTCGACCAACAAAAACAACTTACAATGTGTTGATGAAAGCATGTGGTACGGACTATGATCGTGCTAGAGCTTTGATGTACG AAATGAAGGAAGAAGGCCTTTCGCCTGATAGAATTTGCTGGTCAATATTAATTGACTTGTGTGGAGCCTCAAAGAACGCAGAACTTGCTGTACAGACCTT GCAAGACATGCGTATGGATGGAGTTATACCTGATGTTATTGCATATACAACGACAATCAAGGTATGCGTGGAGAGTGGTAACTCGAAGCTGGCATTTTCG GTGTTTGCTGAAATGAAGAGATACGGAGTAAAACCGGACTTGAAAACTTATAATACCCTTTTACGTGCACGTTCTCAATATGGTTCTTTAAAGGAAATAC AACAGTGCCTCGCTATATATCAAGAAATGAGAAAAGCTGGGTATAATGCAAACGATTACTATCTGAAGCAACTAATTGAGGAATGGTGTGAAGGCGTTAC ACATCGTAGTGGTGCAAGGCAAGGTCGTGTTTCTTCTCAGACCAGAACTGCCTTAGAAGGGTCCCAAAATTTACTTCTTGAGAAAGTGGCAGTACACTTA CAGAAGGGCATCAGTGGAAACGTGACAATCAATCTGCAGGGCCTAACAAAGGTGGAGTCTCGGATTGTGGTTCTGGCTGTTCTCCGAATGATGAAAGAGA AATACAACTTAGAACAACCAATGACAGATGACATATTGATAATGTTTGGGAAGGAAGCAGGCAAGTCAGCCACCAGTGGTTCAGAGCAGAGAGATGCAAT ACTTAAACTACTACGAAAGGACTTGGGGCTTGAGATGTCACCCTCATTCCCTGGTTCAACAGTGAAGCAAGTGGTTTCAGGAAAGGTAGGACGCACAAAG AACATGGAGTTATCTTACACCAGACGACCAGTTATGCAACAGAGAATAACAATCACTAAAGACTCATTGCTTCGTTGGGTGGAGAAAAACAGCAGGTAG
AA sequence Show only first row Show all	>Lus10015053 pacid=23171509 polypeptide=Lus10015053 locus=Lus10015053.g ID=Lus10015053.BGIv1.0 annot-version=v1.0 MRDFFVILGSSSSIVTPPNHPHDGHRHLSPNRKPTTPSRPTSRLLVPNSIRYRLSSRPKTSSFKYQALVAAKLAGDGRLRDFTMILEFVASSGMDPFDFA AALSLKSVGEGILLNLRDGNVQIVFEVFRQVKKLGISPFELFDQVNLQLFRRECGRIAKRKELRRAVQFLENLAGFGFSVRDITEPMEIVKMCVDQRDPD LAVRYGTICQPDRMLLCTIIHEFGKRKDLDSALRAYEAFIELLRIPNMYMYRTIIDVCGICGNYMKSRLIFEVLGPDLVNMIIHDMLRQKIVPNTYFFNS LMSVNAHDLTYTMHIYQKMQEVGVQADTASYNVILKACRLAGRVDAAQNIYNRVRLMKSTSGLKLDVFTYCTIIKVFADAKLWEMALKVKDDMLLSGVTP NVHTWSALLSVCAKAGRVKLAIQLFEEMLQSGCKPNTWCCDILLHACVVARQYDRAFRLFQLWKRNGVRQTLGEINSRETNNIPESVAASEIVSNSHHLN FMKKLPFRPTKTTYNVLMKACGTDYDRARALMYEMKEEGLSPDRICWSILIDLCGASKNAELAVQTLQDMRMDGVIPDVIAYTTTIKVCVESGNSKLAFS VFAEMKRYGVKPDLKTYNTLLRARSQYGSLKEIQQCLAIYQEMRKAGYNANDYYLKQLIEEWCEGVTHRSGARQGRVSSQTRTALEGSQNLLLEKVAVHL QKGISGNVTINLQGLTKVESRIVVLAVLRMMKEKYNLEQPMTDDILIMFGKEAGKSATSGSEQRDAILKLLRKDLGLEMSPSFPGSTVKQVVSGKVGRTK NMELSYTRRPVMQQRITITKDSLLRWVEKNSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	0	1
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	1.7	0.9598
AT1G56500			haloacid dehalogenase-like hyd...		Lus10020699 [exp]	2.0	0.9555
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	3.5	0.9497
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	3.9	0.9390
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	4.9	0.9431
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	5.3	0.9273
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	5.5	0.9382
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	6.3	0.9306
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10008032 [exp]	6.5	0.9196
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	6.7	0.9350

Compare expression of checked genes

Lus10015053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.