Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20280 429 / 2e-150 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023164 [exp] 577 / 0 AT2G20280 468 / 1e-165 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132800 [exp] 468 / 4e-166 AT2G20280 438 / 3e-154 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G045600 [exp] 467 / 1e-165 AT2G20280 413 / 4e-144 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.016G084100 [exp] 458 / 5e-162 AT2G20280 437 / 1e-153 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015054 pacid=23171500 polypeptide=Lus10015054 locus=Lus10015054.g ID=Lus10015054.BGIv1.0 annot-version=v1.0 ATGCCGCCGAAGCAGGCCTCGAAAGCAGACCTGGCGAAGAAGCAGAAGGTTGTAGAAGACAAGACATTCGGATTGAAGAACAAGAACAAGAGCAAAAACG TCCAGAAATATGTTCAGACTCTCAAGCAGTCCGTGCAGCCAAAAGTTGACCCGAGCAAACTCGCTTCTAAGAAAAAGAAAGAGGAAGAGAAAGCCAAAGA GAAGGAGCTAAATGAGTTGTTTAAGATTGCTGTTAGCCAGCCTAAGGTTCCCCCTGGTGTTGATCCAAAGTCCATATTGTGCGAGTTCTTCAAAGTGGGG CAATGCACAAAAGGGTTCAAATGCAAGTTCTCCCACGATCTTAATGTTCAGAGGAAAGGAGAAAAGATTGACATCTTCAGTGATAAGCGCGATGACACAA TGGACGATTGGGATCAGGAAACTCTGGAGAAGGTTGTAGCATCAAAGAACAACGAGTATAACCAGAACAAACCTACTGATATTGTATGCAAACACTTCCT GGATGCTGTGGAAAAGAAGCAATATGGGTGGTTTTGGGTCTGCCCGAATGGTGGTAAAGAGTGCCAGTACCGCCATGCTCTTCCTCCAGGATATATCTTG AAATCTCAGATGAAGGCTCTGCTAGAGGCAGAGTCTGATAAGATACCCATTGAGGAGGAGATTGAGAATCAGCGTGCGAAAGTAGCAACATCTACCCCCA TGACTCCAGATTTGTTCATGCAATGGAAAAAGAAGAAGACAGACGAAAGGGATGCCAGTTTAGATGCACTAAGAGCAGATAGGGCTAAGAATGATAGAAT GAGTGGTCGTGAGCTATTTCTGGCTGATGCTAGCTTGTTTGTGGACGATGCTGAGGCATATGAAAAGTATCAAAGAGCGGAAGAACCTGATGCTCCTGAA AAGAAGGTTGAACAAAAGTCTGACGCCCAGGGACCAAGCACTTCGTCACAAGCCAATGGAGAAGATGCTGAGGATGTTGTTGTTGATGAGGACGATGAGG ATGATGAGCTGGACTTGGATGAACTGAATGAACTGGAAGCAAGCTTGGCAAAAACATCAATCAAAATCCAGGAGCCAGGTGAGGTGAAACGAATTTGA
AA sequence Show only first row Show all	>Lus10015054 pacid=23171500 polypeptide=Lus10015054 locus=Lus10015054.g ID=Lus10015054.BGIv1.0 annot-version=v1.0 MPPKQASKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQTLKQSVQPKVDPSKLASKKKKEEEKAKEKELNELFKIAVSQPKVPPGVDPKSILCEFFKVG QCTKGFKCKFSHDLNVQRKGEKIDIFSDKRDDTMDDWDQETLEKVVASKNNEYNQNKPTDIVCKHFLDAVEKKQYGWFWVCPNGGKECQYRHALPPGYIL KSQMKALLEAESDKIPIEEEIENQRAKVATSTPMTPDLFMQWKKKKTDERDASLDALRADRAKNDRMSGRELFLADASLFVDDAEAYEKYQRAEEPDAPE KKVEQKSDAQGPSTSSQANGEDAEDVVVDEDDEDDELDLDELNELEASLAKTSIKIQEPGEVKRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015054 [exp]	0	1
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	5.1	0.6960
AT5G37475			Translation initiation factor ...		Lus10028057 [exp]	8.9	0.6639
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	15.5	0.6447
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	20.0	0.6067
AT4G21110			G10 family protein (.1)		Lus10023881 [exp]	22.2	0.6023
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	26.3	0.6430
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	28.5	0.6286
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10043181 [exp]	31.5	0.5838
AT3G09890			Ankyrin repeat family protein ...		Lus10023911 [exp]	40.6	0.6038
AT5G37475			Translation initiation factor ...		Lus10008317 [exp]	41.1	0.6224

Compare expression of checked genes

Lus10015054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.