Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37050 1278 / 0 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G67720 830 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G28960 460 / 1e-147 Leucine-rich repeat protein kinase family protein (.1) AT1G51880 455 / 1e-145 RHS6 root hair specific 6 (.1) AT1G51805 452 / 1e-144 Leucine-rich repeat protein kinase family protein (.1.2) AT3G46340 452 / 2e-144 Leucine-rich repeat protein kinase family protein (.1) AT2G29000 450 / 7e-144 Leucine-rich repeat protein kinase family protein (.1) AT5G59670 449 / 2e-143 Leucine-rich repeat protein kinase family protein (.1) AT2G19230 451 / 9e-143 Leucine-rich repeat transmembrane protein kinase protein (.1) AT3G21340 447 / 1e-142 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023166 [exp] 1727 / 0 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 1541 / 0 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 857 / 0 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 852 / 0 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025849 [exp] 439 / 1e-139 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019237 [exp] 390 / 2e-120 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025926 [exp] 382 / 1e-117 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 352 / 8e-107 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 292 / 2e-87 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084900 [exp] 1421 / 0 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 1412 / 0 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G052800 [exp] 877 / 0 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 859 / 0 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G004700 [exp] 425 / 1e-133 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.002G242700 [exp] 417 / 8e-131 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094200 [exp] 340 / 1e-106 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 289 / 9e-84 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 288 / 3e-83 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 280 / 3e-80 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10015057 pacid=23171519 polypeptide=Lus10015057 locus=Lus10015057.g ID=Lus10015057.BGIv1.0 annot-version=v1.0 ATGAAACAGCTCGAAGGCAAGTTCTCAACAATGGAAATGGAGGATTCGACAGTGGAAGATGAATCTGGGTTTGTGAGTTTGGACTGCGGCGGTAAAGGGA ATTATACTGATGAAATCGGGTTGCAGTGGTCTTCAGATGATGATCTTATGTTCGGAGAAACCACAAACATAACCGTTGCAAATGAGACTAGGAGGCAATA CACGACGCTGAGGCATTTCCCTGCTGATTCGAGGAAGTATTGTTATACATTGGGCGTCACAAGTAGGACGAGATATCTATTGAGAGCAACTTTCCTATAT GGTAACTTTGACAACAACAATGTATATCCAAAATTCGATATCTCCGTGGGAGCAACTCGCTGGTCAACCATTGTCATTTCTGATGCTAATACCATAGAGT CTGCAGAGCTAATATTTCTGGCTTCAACTCCAAATATTAGTGTGTGCTTATCCAACGCTACAACTGGACAGCCTTTTATATCTACCCTTGAGCTTCGACA GTTCAATGGTTCGGTCTATTATACACCATCAGAAAACCAGTTTTACCTCAGTGTATCTGCTAGAATCAATTTCGGCGCAGACAGTGCAGCTCCTGTCAGG TATCCTGATGACCCATTTGATAGAATATGGGAATCCGACTCGCTGAAGAAAGCAAATTATCTCGTTGATGTTGCTGCCGATGAAATGCCTCCTGAGAAAG TGATGCAGACAGCTGTAGTTGGGACAAATGGTTCCCTAACCTATCGTTTGAACCTGGATGGTTTTCCTGATGATGCTTGGGCTTTTACATATTTAGCTGA AATTGAAGATTTGCTTCCTCAAGAATCCAGAAAGTTCAGGCTAGTGCTTCCTGGAGACCCTGCTCTGAGCAAAGCCGTTGTTAATATCCAAGAGAATGCT CAAGGAAAATATCGTCTCTATGAACCGGGATATACCAATATATCCCTCCCCTTTGTTTTGTCTTTTAGATTTGGCAAGACTTCTGATTCAACCAAAGGGC CGCTCGTGAATGCCATGGAGATAAACAAGTACCTAGGGATCAATTATGGATCTCCTGATGGAGGAGTTATCAATAATGTGGTTTACTTAAATCCCTCTGC GGATTGGGCAAAAGAAGGGGGTGACCCATGTCTGCCGGTTCCTTGGTCCTGGGTCCAGTGTAACTCTGATGAACAACCCAGAATAACTAAAGTCTCCTTG TCTAATAAGAATTTGACCGGAAATATTCCTTCAGACTTGACAAAGCTGACTGGCTTGGTTGAATTATGGCTTGATGGGAATTCACTCACTGGACCATTTC CTGATTTCAGCGGATGTCCAGACCTGGAGATCATTCATCTAGAGAACAATCAGTTGACAGGGCAGCTGCCATCATATCTCGCAGATCTACCAAATTTCAG GGAACTGCACGTGCAGAACAATATGTTGTCTGGAACAGTACCATCGGGCCTCCTCAACAAGAATATAGAATTGAACTACTCAGGAAATATCAATCTTCAT GAAGGAGGTGGAAGATCGAAACATATGAATGTTATTATTGGTGCATCAGTCGGTGCAGCTCTTATCTTGCTAATAGCTTTAGCTGTAGCTTGCATATTGA TGCGGAGAGGGAAGAAAAAACATCCTGATCAAGAACCTGCTGACAGTAAAGTACTTTTAGGTAAGCCTCAAGTATCCTTGCCTGTTCAGAAGGTACTTTC TGGCTTAGGTGATCCTTCTGCAGATGCTGCACATTACTTTACTTATACGGAGATTGTAGAAGCAACCAAAGATTTTGAGAGGAAAATAGGCTCTGGCGGT TTTGGTATTGTATACTATGGAAAAACGAAAGATGACAGGGAAATTGCTGTTAAGGTTCTAACCAGCAATTCATATCAGGGAAAGCGAGAGTTTGCAAATG AGGTCACTCTTCTCTCAAGGATACACCACAGAAATTTGGTACAGTTTCTGGGTTTTTGTCAAGAAGAAGGGAAAAATATGCTTATTTATGAGTACATGCA CAATGGGACTCTCAAAGAACATCTTTATGGGCCTCTAACCCATGGAAGAAGCATTAATTGGATCCAGCGCTTAGAGATTGCTGAGGATTCTGCAAAAGGG ATTGAATACCTTCACACAGGTTGTGTCCCGGCCATTATCCACAGGGACCTGAAAACCAGCAATATTCTCCTCGACAAACATATGAAAGCAAAGGTGTCAG ATTTCGGCCTTTCGAAAATTGCGGCTGATGGAGCTTCTCATGTATCAAGCATTGTTCGCGGCACCGTTGGCTATTTGGATCCAGAGTATTATATCTCTCA GCAGCTTACGGACAAGAGCGATGTTTATAGTTTCGGTGTGATTCTCCTGGAGCTGATGTCTGGTCAAGAGGCCATATCCAACGAAAGCTTTGGCGTTAAC TGCCGTAATATTGTTCAATGGGCAAAGCTACACATCGAGAGTGGGGATATCCAACGAATCATCGATCCCGTACTGGGAGAGGACTATGATATTCAGTCAA TGTGGAAGATAGCAGAGAAGGCTCTGATGTGTGTCCAGCCACACGGCCACATGAGGCCATCGATTTCGGAAGTTCTGAAAGAGGTCCAAGACGCCATCTT GATTGAGAAGGAAGCCAAGGCAGTGAGAGAAGGCATATCGGATGACATGTCCAGAACTTCAGCTCAGTCTTCTCTGGTGTTGGGGGGATACATGGACATG GGCGGAGTTGATAATTCGCTTTCCTTGGACGATTCCATGGCTAAGCCAACCGCAAGAGTTTGTACCGGCCAAAGAAGTTCCACACCATTTGTTCCTGAAA TCAAGAGATATCACCAGTTTATTCAATGGTTCATGGCAACAAGTGGTAGTGCAAGTGGGGGGTTTTCGAAATAA
AA sequence Show only first row Show all	>Lus10015057 pacid=23171519 polypeptide=Lus10015057 locus=Lus10015057.g ID=Lus10015057.BGIv1.0 annot-version=v1.0 MKQLEGKFSTMEMEDSTVEDESGFVSLDCGGKGNYTDEIGLQWSSDDDLMFGETTNITVANETRRQYTTLRHFPADSRKYCYTLGVTSRTRYLLRATFLY GNFDNNNVYPKFDISVGATRWSTIVISDANTIESAELIFLASTPNISVCLSNATTGQPFISTLELRQFNGSVYYTPSENQFYLSVSARINFGADSAAPVR YPDDPFDRIWESDSLKKANYLVDVAADEMPPEKVMQTAVVGTNGSLTYRLNLDGFPDDAWAFTYLAEIEDLLPQESRKFRLVLPGDPALSKAVVNIQENA QGKYRLYEPGYTNISLPFVLSFRFGKTSDSTKGPLVNAMEINKYLGINYGSPDGGVINNVVYLNPSADWAKEGGDPCLPVPWSWVQCNSDEQPRITKVSL SNKNLTGNIPSDLTKLTGLVELWLDGNSLTGPFPDFSGCPDLEIIHLENNQLTGQLPSYLADLPNFRELHVQNNMLSGTVPSGLLNKNIELNYSGNINLH EGGGRSKHMNVIIGASVGAALILLIALAVACILMRRGKKKHPDQEPADSKVLLGKPQVSLPVQKVLSGLGDPSADAAHYFTYTEIVEATKDFERKIGSGG FGIVYYGKTKDDREIAVKVLTSNSYQGKREFANEVTLLSRIHHRNLVQFLGFCQEEGKNMLIYEYMHNGTLKEHLYGPLTHGRSINWIQRLEIAEDSAKG IEYLHTGCVPAIIHRDLKTSNILLDKHMKAKVSDFGLSKIAADGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELMSGQEAISNESFGVN CRNIVQWAKLHIESGDIQRIIDPVLGEDYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEVQDAILIEKEAKAVREGISDDMSRTSAQSSLVLGGYMDM GGVDNSLSLDDSMAKPTARVCTGQRSSTPFVPEIKRYHQFIQWFMATSGSASGGFSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37050			Leucine-rich repeat protein ki...		Lus10015057 [exp]	0	1
AT1G52155			unknown protein		Lus10025835 [exp]	1.0	0.8371
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10024522 [exp]	8.1	0.8145
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	12.2	0.8108
AT4G32910			unknown protein		Lus10011625 [exp]	13.6	0.8044
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	14.9	0.8266
AT1G16570			UDP-Glycosyltransferase superf...		Lus10014357 [exp]	16.6	0.7684
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	16.6	0.7814
AT3G54970			D-aminoacid aminotransferase-l...		Lus10040366 [exp]	18.5	0.8037
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	18.6	0.7775
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	19.5	0.7712

Compare expression of checked genes

Lus10015057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.