Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09650 894 / 0 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 156 / 7e-40 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 156 / 8e-40 RPF2 rna processing factor 2 (.1) AT1G03100 156 / 3e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 150 / 2e-37 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G63130 149 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 144 / 8e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 144 / 9e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 142 / 4e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 142 / 4e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023168 [exp] 309 / 1e-99 AT3G09650 314 / 1e-102 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029737 [exp] 162 / 2e-41 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 160 / 1e-40 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10007353 [exp] 151 / 1e-37 AT1G03100 1003 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 150 / 2e-37 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 149 / 6e-37 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 146 / 8e-36 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 143 / 6e-35 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 142 / 1e-34 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085300 [exp] 965 / 0 AT3G09650 961 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 171 / 8e-45 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 166 / 3e-43 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 166 / 1e-42 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 156 / 8e-40 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 155 / 2e-39 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 154 / 2e-39 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 153 / 7e-39 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 152 / 1e-38 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 151 / 3e-38 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015059 pacid=23171527 polypeptide=Lus10015059 locus=Lus10015059.g ID=Lus10015059.BGIv1.0 annot-version=v1.0 ATGGTGAGTTATTACTGCTTGGCTCCCACTGGATGCTACGAAATTGCATCGTTAGCAGGCTCCACACCACAAGCTGGCCAAAAGCCCACTAACATTCACT CCCCTTTGTTCTTTTCTCATTATCCTCTCTTTCATCATTTCTCAAAACAATTAGATGGGCTCCGACCACCGTCCCCGCCGCCGCCAGCAACCATGAACTT ACCCCTACCTTTCCCCTCTCCGTCTACTTCTTCTTCTTCTTCTTCTTCTTCCTCGCACTCCCTCCTTAACTTCTTCTCACTTCCTCCCCCTTTACATTCC TTCTTTCAAACTCAAACATCACTTTCCTCCTCTAGATCCACCCGCTCTTTCTGCTCCCAAACCACCACCGCCGCCATCGTCCCCACTTCCTCCGACGACA GAGACCAAGCTCTCTTATTCCTCCTCCGTCAGCGCAAAACCGATGAGGCTTGGGCGCTTTACCAGGCGTCTTCTCATCTTCCCAATTCCGTCTGCCTTAG CCGCCTAGTCTCCCAACTCTCCCATAAAAACACCCCTCTCGCCCTCACCCGCGCACAGTCCATCCTCACGCGCCTCCGCAATGACCGCCAGCTCCACCGC CTTGACGCCAACTCCCTCGGCCTCCTCGCCGTCTCCGCCACCAAGTCCGGACAGCTCCCCTACGCTGTCTCCCTCATCAACTCGATGCTCCGCTCCGGCT ACATCCCACACGTTAAAGCCTGGTCCGCCGTCGTCGGCCGTCTCGCCTCTTCCCCAGACGATGGCCCCGTCCAAGCCGTCAGGCTCTTCAAATCAATTGT CAGGAGAATACGGCGGTTGTCCGACGACGGAATGGTGCATGATTTCATGCCCGACACGGCTGCTTACAATAGCGCCCTCAACGCTTGCGCCAACCTCGGG GATCCGAAAACGTTCCTCCAACTGTTCGACGAAATGTGTGACTGCGGACTTGAACCCGATAGCTTCACTTATAATGTAATGTTGAAGCTCTGCGCTCGTC GTAATAGGAAAGACTTGATGGTTGTGGTTGTTGAGAAGGCAATTCGGAAGGGAATCCCTTTCTGTGTCACCACTCTCCAATCTCTTGTGGCGGCTTACAT TGGGTTTGGAGATTTGGAAACAGCTGAGAAGTTGGTTCAAGCAATGAGGGATGGAAGGAGAGACTTGTGTAAGATTATGAGGGAGGCTTATGAGGAGGAA TTGAGAGAAGAAGAAGATGATTATGATTATGAGAACGTGGGTGAGAAGTTGGTAGCCAAATCCAATGAGGACGACGACAACGATGATGCAGAAGTGTTTG AGTTGCTTCTTCCTAGTGAAGGAAGTGAAACAGAGCCGCCATTGCTTCCAATAGCTTACGCCCCTAACACTAGACTATACACCACATTGATGAAAGGTTA CATGAAGCAAGGTCGACTTACAGACACAGTGAGGATGCTGGAAGCTATGAGGCATGAGGATAACCAAGCCAGCCTCCCTGATCATGTCACCTATACCACA GTTGTTTCTGCTTTCGTCAAGGCAGGTAAGATGGATCGTGCTCGACAAGTGCTGGCTGAGATGACGAGGATCGGAGTACCAGGAAACAGGATTACTTATA ACATTCTGTTGAAGGGATACTGCCAGCAGCTGCAGATAGACAAAGCGAAAGAGCTGATGAAAGAGATGGAAGATAATGCTGAGATTGAGCCTGATGTCGT CTCTTATAACATTATGATTGACGGGTGTATAATGGTAGATGACAGTTCTGAGGCTCTTACCTTCTTCAATAAGATGCGGTCAAAAGGGATTCCTCCAACC AAGATCAGCTACACTACGTTGATGAAAGCTTTTGCCTCATCGGGTCAACCGAATTTGGCCAACAAAGTTTTCGACGAAATGCTGAAAGATTCGCGAGTCA AAGTTGATTTGATTGCCTGGAATATGTTAGTTGAAGGGTATTGTAAGTTGGGGTTGGTTCAGGAAGCGAAGAGAGTTGTAGAGAAGATGAAGGAGAATGG GTTTTACCCTGATGTGGCTACTTATGGAAGTCTAGCAAATGGAATAGCATTGGCTAAAAAACCAGGGGAAGCTCTTCTGTTATGGAAGGAAGTAAAAGAT AGATGCGAGATGAAATGGAAAGGAGAGAGTTCCGAGTCCAACCCTGATTCGCCTCCTGTCCCACCTTTGAGGCCCGATGAAGAGCTGTTAGATACACTGG CTGATATCTGCGTCAGAGGTGCTTTCTTCCAGAAGGCTTTGGAGATCGTTGCCTGCATGGAAGAATATAGAATTCCACCAAACAAGTCAAAGTACAAGAA GATTTACGTGGAGATGCATTCCAGGATGTTTACCAGTAAACATGCGTCGCAAGCGAGGCAAGATCGGAGGAAAGAGAGGAAGAGAGCAGCCGAGGCTTTC AAGTTTTGGTTAGGTTTGCCTAATGAATATTATGGAAGCGAATGGCGACTGGATCCCTAG
AA sequence Show only first row Show all	>Lus10015059 pacid=23171527 polypeptide=Lus10015059 locus=Lus10015059.g ID=Lus10015059.BGIv1.0 annot-version=v1.0 MVSYYCLAPTGCYEIASLAGSTPQAGQKPTNIHSPLFFSHYPLFHHFSKQLDGLRPPSPPPPATMNLPLPFPSPSTSSSSSSSSSHSLLNFFSLPPPLHS FFQTQTSLSSSRSTRSFCSQTTTAAIVPTSSDDRDQALLFLLRQRKTDEAWALYQASSHLPNSVCLSRLVSQLSHKNTPLALTRAQSILTRLRNDRQLHR LDANSLGLLAVSATKSGQLPYAVSLINSMLRSGYIPHVKAWSAVVGRLASSPDDGPVQAVRLFKSIVRRIRRLSDDGMVHDFMPDTAAYNSALNACANLG DPKTFLQLFDEMCDCGLEPDSFTYNVMLKLCARRNRKDLMVVVVEKAIRKGIPFCVTTLQSLVAAYIGFGDLETAEKLVQAMRDGRRDLCKIMREAYEEE LREEEDDYDYENVGEKLVAKSNEDDDNDDAEVFELLLPSEGSETEPPLLPIAYAPNTRLYTTLMKGYMKQGRLTDTVRMLEAMRHEDNQASLPDHVTYTT VVSAFVKAGKMDRARQVLAEMTRIGVPGNRITYNILLKGYCQQLQIDKAKELMKEMEDNAEIEPDVVSYNIMIDGCIMVDDSSEALTFFNKMRSKGIPPT KISYTTLMKAFASSGQPNLANKVFDEMLKDSRVKVDLIAWNMLVEGYCKLGLVQEAKRVVEKMKENGFYPDVATYGSLANGIALAKKPGEALLLWKEVKD RCEMKWKGESSESNPDSPPVPPLRPDEELLDTLADICVRGAFFQKALEIVACMEEYRIPPNKSKYKKIYVEMHSRMFTSKHASQARQDRRKERKRAAEAF KFWLGLPNEYYGSEWRLDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10015059 [exp]	0	1
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10011212 [exp]	4.2	0.8793
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10000867 [exp]	5.8	0.8865
AT4G40042			Microsomal signal peptidase 12...		Lus10011365 [exp]	6.6	0.8455
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Lus10022662 [exp]	6.7	0.8725
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10033574 [exp]	13.4	0.8395
AT5G38060			unknown protein		Lus10004070 [exp]	14.4	0.8440
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10009540 [exp]	17.7	0.8662
AT3G62630			Protein of unknown function (D...		Lus10020690 [exp]	20.2	0.8184
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10002829 [exp]	22.1	0.8460
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10028244 [exp]	22.2	0.8187

Compare expression of checked genes

Lus10015059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.