Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09660 596 / 0 MCM8 minichromosome maintenance 8 (.1) AT5G44635 211 / 6e-60 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT4G02060 205 / 3e-58 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G07690 204 / 7e-58 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G16440 202 / 1e-56 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G46280 193 / 1e-53 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT1G44900 193 / 2e-53 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G14050 178 / 6e-49 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023169 [exp] 729 / 0 AT3G09660 1038 / 0.0 minichromosome maintenance 8 (.1) Lus10036244 [exp] 207 / 2e-58 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10038384 [exp] 206 / 4e-58 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10040017 [exp] 204 / 6e-58 AT2G07690 1060 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10002427 [exp] 203 / 1e-57 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10001452 [exp] 203 / 2e-57 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10019592 [exp] 200 / 2e-56 AT2G07690 1075 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10028795 [exp] 198 / 3e-55 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10017491 [exp] 197 / 5e-55 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131900 [exp] 636 / 0 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.001G074000 [exp] 207 / 2e-58 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.018G112800 [exp] 204 / 4e-58 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.014G121000 [exp] 203 / 1e-57 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.009G121500 [exp] 202 / 6e-57 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.006G188700 [exp] 201 / 7e-57 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 191 / 7e-53 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G070500 [exp] 189 / 8e-52 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.019G014403 [exp] 177 / 1e-48 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 69 / 8e-15 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10015060 pacid=23171536 polypeptide=Lus10015060 locus=Lus10015060.g ID=Lus10015060.BGIv1.0 annot-version=v1.0 ATGAAAAACTCCAAGTCGCAATCTACTTTTGATGAATTGCAAGATTCCGTGTCAAATGCTAGAGCTACAGAGCTGTCTGACTTGTTTTCATTTTCTTCGA AAGACCTGGAATTTGTGGTGAAGTGTTGTCAAGAATATGGCTCCGACATATTCAGACAATTACTTCATTCTATATGTCCATCTATTTTCGGACATGAGCT TGTTAAAGGATTTCTTCCGTTTTGCATATATACTTTTGCCTCATCGATGCTTTACATTCACTATCCTTTGGCAGCGGGAATTACACTGTCACTTTTTGGA GGTGTTCGTAAGCATACAATGGATCAGAATAAGGTCCCTGTCAGGGGAGACATCCATGTCATAATTCTTGGTGATCCTGGACTGGACAAGAGTCAATTAC TACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATTTACGTGTGTGGCAATGCAACAACCAATGCTGGCCTCACTGTTGCTGTTGTAAAAGACTCAATGAC AAACGACTATTCTTTTGAGGCTGGGGCAATGGTGCTTGCAGACAGTGGTCTGTGTTGTATTGATGAATTTGATAAATTGTCTGCCGAACATCAGGCCCTT CTGGAAGCTATGGAGCAACAATGTGTCTCTGTGGCAAAGGCTGGACTTCTGGCGAACTTGTCAGCAAGGACTTCTGTTTTAGCTGCAGCAAATCCTGTGG GCGGTCATTATAACCGAGCAAAGACGGTGAATGAGAACCTGAGGATGAGTGCTGCTCTCTTGACACGATTTGATCTGGTGTTCATATCACTTGATAAACA TGATGAAGAACTTGACAAGCGCCTGTCAGATCACATAATATCGGATGCTGAATTCTCTCCTTTGCCCGCTTCAGTTCTGCGAAAATACATTGCCTATGCA AGAACTTACGTCTTCAACTTCCTCGAATTTGTCAACTTTGATGCAACATCTATCATGCAACCAAACTGCAAGCTGTTGATCAGCAATTCTTCCCTTTACT TTTTTCTGATGTACAGGATGACAAAGCCAGCAGCCGAGATTCTTCAAAAATTCTATTTGCGACTGAGGGACAGCAACACATCAGGTGATGGCATACCCAT AACAGCAAGGCAGTTGGAAAGTCTGGTAAGACTAGCTGAAGCTCGAGCTCAGCTTGAACTGAGAGAAGAAATAACATCCCAAAATGCAACGGATGTTGTG GAAATAATGAAAGAGTCTCTGAATGACAAATGTCTTGATGATAATGGCGTTGTGGATTTCGGTCGGAGTGGTGAAATGAGTCAGCCGAAGGAAGCAAAAC GGTTTCTAGGCTCCCTCAATAAGCAGTCCGAGTTGCAGCAAAAAGATACCTTTTCAATCCCAGAAATGTACAGTTTGGCGGACAGGATTGCGCTAAACGT TCCTGATGTCAACACGTTGGTGGAAAATTTGAACAGTGTTGGCTATATCATAAAAAAGGGACCGAAAATGTATCAGGTAAAGAAATCACCCTAA
AA sequence Show only first row Show all	>Lus10015060 pacid=23171536 polypeptide=Lus10015060 locus=Lus10015060.g ID=Lus10015060.BGIv1.0 annot-version=v1.0 MKNSKSQSTFDELQDSVSNARATELSDLFSFSSKDLEFVVKCCQEYGSDIFRQLLHSICPSIFGHELVKGFLPFCIYTFASSMLYIHYPLAAGITLSLFG GVRKHTMDQNKVPVRGDIHVIILGDPGLDKSQLLQAAAAVSPRGIYVCGNATTNAGLTVAVVKDSMTNDYSFEAGAMVLADSGLCCIDEFDKLSAEHQAL LEAMEQQCVSVAKAGLLANLSARTSVLAAANPVGGHYNRAKTVNENLRMSAALLTRFDLVFISLDKHDEELDKRLSDHIISDAEFSPLPASVLRKYIAYA RTYVFNFLEFVNFDATSIMQPNCKLLISNSSLYFFLMYRMTKPAAEILQKFYLRLRDSNTSGDGIPITARQLESLVRLAEARAQLELREEITSQNATDVV EIMKESLNDKCLDDNGVVDFGRSGEMSQPKEAKRFLGSLNKQSELQQKDTFSIPEMYSLADRIALNVPDVNTLVENLNSVGYIIKKGPKMYQVKKSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	0	1
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	2.2	0.8528
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026243 [exp]	4.2	0.8198
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10029880 [exp]	5.2	0.7566
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	8.1	0.8024
					Lus10041470 [exp]	8.7	0.7468
					Lus10000538 [exp]	10.0	0.8057
AT3G09550			Ankyrin repeat family protein ...		Lus10003986 [exp]	10.6	0.7338
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	11.1	0.8122
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	12.4	0.8009
					Lus10034724 [exp]	15.4	0.7756

Compare expression of checked genes

Lus10015060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.