Plant FIBer expression Database

Lus10015062 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67070 505 / 1e-178 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
AT3G02570 498 / 4e-176 PMI1, MEE31 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033563
[exp]
571 / 0 AT1G67070 534 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Lus10028480
[exp]
565 / 0 AT1G67070 539 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Lus10009165
[exp]
565 / 0 AT1G67070 540 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Lus10017603
[exp]
480 / 3e-169 AT3G02570 462 / 7e-162 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G099100
[exp]
531 / 0 AT1G67070 573 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Potri.017G115500
[exp]
527 / 0 AT3G02570 560 / 0.0 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF01238 PMI_typeI Phosphomannose isomerase type I
Representative CDS sequence
>Lus10015062 pacid=23171546 polypeptide=Lus10015062 locus=Lus10015062.g ID=Lus10015062.BGIv1.0 annot-version=v1.0
ATGGGGTCGGAATTCGTGAAGGAGGGGCTTGTGCGGCTGAGGTGCTGTGTCCAGAACTATGATTGGGGAAGACACGGCAAGGACTCGCTGGTCGGGAGGC
TGTCATCGTCTGCCGAAATCGACGACCAGCCTTATGCTGAACTGTGGATGGGGATCCATGACTCTGCCCCTTCTTTCGTCTTTGATTCTTCTTTGAGTTT
GAAACACTGGATTGCTCAGAATCCTTGTGCGCTCGGTCATAAGGTCTTGCGTTGCTGGGGAACTCATCTTCCCTTCTTGTTCAAGATACTATCTGTGGGG
AAGGCATTATCAATTCAAGCACATCCAGATAAAGAATTGGCAGAGCAGCTCCACAAGTCCAACCCAATTGCTTATAAGGACGACAATCACAAGCCAGAAA
TGGCTCTTGCATTAACACCCTTCCAAGCCCTTTCTGGTTTCGGTTCTCTCCAGGAGCTCAGAGATGTGCTTCACAACATTCCAGAGATCATGGAGCTGGT
CAACAGGGAAGACATAAACCAACTGTTAGAAGTTACCAACCATGAGGAAGTACTGATCAAGTCAAGATTCAAATCCATTTTCACCCAGTTGATGTCAGCC
AGCAAGGAGTCCACAGCAAAAGCAGTATCCAATTTGAAAAATAGACTGCAAACTCAGAGCCAGGTTAGGGAGTTAAGCGACAAGGAAAATCTGGTAGTGG
AATTGGAGAAGCAATATCCAGGTGATGTCGGGGTGATATCAGCCTTGTTCCTCAACCATGTGAAGCTCAATCCTGGACAAGCTTTGTACATTGGAGCAAA
CGAACCCCATGCCTATCTATGCGGCGACTGCATCGAAGTGATGGCAACTTCGGACAATGTGGTCCGAGCTGGCCTCACTCCCAAGTACCGCGACGTCCAT
ACTCTTTGTTCTATGCTCACCTACAAACAGGGAGTTCCGGAGATTCTGAATGGGTTTCCTATGAATGAATACACGACAAGGTACCTTCCACCATTTGACG
AATTTGAGGTGGATCGTTGCTTGCTTCCCGGAGGCGAATCGACTGTTTTTCCTGCAGTTGATGGACCGTCGATTTATGTGGTGATAAGTGGGGAGGGTGC
GATGGAGGGCGGATTCTCGACGCAGTCTTTGAGGGAAGGAGATGTTATATTTGCACCTGCAGATACAGTAATCAATGTGAGCAGCACTAGTGCAACTGAG
CTACAATTGTATAGAGCTGGCGTCAATAGTAGATTCCTTCAAGCCATCTGA
AA sequence
>Lus10015062 pacid=23171546 polypeptide=Lus10015062 locus=Lus10015062.g ID=Lus10015062.BGIv1.0 annot-version=v1.0
MGSEFVKEGLVRLRCCVQNYDWGRHGKDSLVGRLSSSAEIDDQPYAELWMGIHDSAPSFVFDSSLSLKHWIAQNPCALGHKVLRCWGTHLPFLFKILSVG
KALSIQAHPDKELAEQLHKSNPIAYKDDNHKPEMALALTPFQALSGFGSLQELRDVLHNIPEIMELVNREDINQLLEVTNHEEVLIKSRFKSIFTQLMSA
SKESTAKAVSNLKNRLQTQSQVRELSDKENLVVELEKQYPGDVGVISALFLNHVKLNPGQALYIGANEPHAYLCGDCIEVMATSDNVVRAGLTPKYRDVH
TLCSMLTYKQGVPEILNGFPMNEYTTRYLPPFDEFEVDRCLLPGGESTVFPAVDGPSIYVVISGEGAMEGGFSTQSLREGDVIFAPADTVINVSSTSATE
LQLYRAGVNSRFLQAI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67070 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DA... Lus10015062
[exp]
0 1
AT1G14590 Nucleotide-diphospho-sugar tra... Lus10017981
[exp]
1.7 0.9916
AT3G07310 Protein of unknown function (D... Lus10002342
[exp]
3.5 0.9860
AT5G15130 WRKY ATWRKY72, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Lus10037205
[exp]
5.0 0.9825
AT5G56110 MYB MS188, ATMYB80,... MALE STERILE 188, ARABIDOPSIS ... Lus10027110
[exp]
5.8 0.9695
AT3G11840 PUB24 plant U-box 24 (.1) Lus10008368
[exp]
6.5 0.9810
AT2G35980 NHL10, YLS9, AT... YELLOW-LEAF-SPECIFIC GENE 9, A... Lus10016962
[exp]
7.5 0.9853
AT1G70420 Protein of unknown function (D... Lus10030612
[exp]
7.7 0.9811
AT4G14480 Protein kinase superfamily pro... Lus10041162
[exp]
8.1 0.9789
AT4G36220 CYP84A1, FAH1, ... ferulic acid 5-hydroxylase 1 (... Lus10041511
[exp]
8.5 0.9804
AT3G26770 NAD(P)-binding Rossmann-fold s... Lus10021313
[exp]
9.2 0.9853

Lus10015062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.