Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02960 233 / 2e-75 Ribosomal protein S12/S23 family protein (.1) AT3G09680 229 / 9e-74 Ribosomal protein S12/S23 family protein (.1) AT5G14180 212 / 2e-63 MPL1 Myzus persicae-induced lipase 1 (.1) AT2G15230 196 / 1e-57 ATLIP1 lipase 1 (.1) ATCG00905 51 / 4e-08 ATCG00905.1, RPS12C ribosomal protein S12C (.1) ATCG01230 51 / 4e-08 ATCG01230.1, RPS12B ribosomal protein S12B (.1) AT1G73920 45 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023171 [exp] 500 / 1e-175 AT5G14180 358 / 3e-121 Myzus persicae-induced lipase 1 (.1) Lus10015158 [exp] 350 / 8e-117 AT5G14180 351 / 2e-118 Myzus persicae-induced lipase 1 (.1) Lus10031524 [exp] 349 / 2e-116 AT5G14180 359 / 2e-121 Myzus persicae-induced lipase 1 (.1) Lus10015159 [exp] 271 / 3e-86 AT5G14180 409 / 2e-141 Myzus persicae-induced lipase 1 (.1) Lus10031523 [exp] 270 / 9e-86 AT5G14180 410 / 1e-141 Myzus persicae-induced lipase 1 (.1) Lus10023172 [exp] 252 / 1e-82 AT5G02960 268 / 3e-94 Ribosomal protein S12/S23 family protein (.1) Lus10026479 [exp] 252 / 1e-82 AT5G02960 268 / 3e-94 Ribosomal protein S12/S23 family protein (.1) Lus10019910 [exp] 252 / 1e-82 AT5G02960 268 / 3e-94 Ribosomal protein S12/S23 family protein (.1) Lus10038401 [exp] 234 / 6e-72 AT5G14180 383 / 4e-131 Myzus persicae-induced lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159800 [exp] 297 / 2e-96 AT5G14180 422 / 3e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159900 [exp] 293 / 1e-94 AT5G14180 421 / 9e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159700 [exp] 288 / 9e-93 AT5G14180 441 / 5e-154 Myzus persicae-induced lipase 1 (.1) Potri.006G131500 [exp] 246 / 2e-80 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1) Potri.010G217100 [exp] 246 / 2e-80 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1) Potri.008G044400 [exp] 246 / 2e-80 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1) Potri.016G085800 [exp] 246 / 2e-80 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1) Potri.001G332300 [exp] 226 / 6e-69 AT5G14180 533 / 0.0 Myzus persicae-induced lipase 1 (.1) Potri.009G094900 [exp] 196 / 2e-57 AT2G15230 564 / 0.0 lipase 1 (.1) Potri.017G069700 [exp] 179 / 3e-51 AT5G14180 374 / 4e-128 Myzus persicae-induced lipase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00164 [flax] [poplar] Ribosom_S12_S23 Ribosomal protein S12/S23
Representative CDS sequence Show only first row Show all	>Lus10015063 pacid=23171511 polypeptide=Lus10015063 locus=Lus10015063.g ID=Lus10015063.BGIv1.0 annot-version=v1.0 ATGGGAGCAGCTCGCAAGCTGAAGGACCACCGTAGGAGGCAGAGGTGGGCTGACAAAGCTTACAAGAAGTCCAATTTGGGAAACGAGTGGAAGAAGCCAT TCGCTGGTTCTTCCCATGCTAAAGGCATTGTGCTCGAGAAGATTGGTATTGAAGCCAAGCAGCCTAACTCTGCTATCAGAAAGTGTGCCCGTGTCCAGCT TATCAAGAACGGAAAGAAGATTGCAGCCTTTGTCCCCAACGATGGTTGCTTGAATTACATTGAGGAGAATGATGAGGTTCTTATTGCTGGATTCGGTAGG AAGGGACATGCTGTGGGTGATATTCCCGGAGTCCGTTTCAAGGTTGTGAAGTGCACTGAAAACAGGCTTCAGTTCACAACACAACCCAAGTACAAGATGG CTAATGCTAATCTACAGTCGGTTGCATCATTCATCCTGGTTTGTGGGATGTTAGCCTTGGCTGCTGCTGCCGCTGTTAATTGTGTCTGCCGATCAGTCGT TGAGCCACTAGGCTATGGCTGCGTAGAACACAATATACAAATAAAATGTGACAACAAAAGACGGATACATAGCCTCCAGAGAATCGCTAGTAAATCCGGT GGCGACTCCAGAACTGGAAAACCCGTTCTGTTACAGCATCGGCTGTTCATGGATGGAGTAACGTGGTTTCTGTTATCTCCGGGCCAGAATCTTGCATTCC TCATGGCAGATAACGGTTATAATGTCTGGGTTGTTAGTGGCCGCGGAACACAAATTAGCGCGGCCATGTTTCGTACGACTTACTGGGATTGGACATGGGA TGAACTGGCGGAATTCGATCTGCATGCCACGATTGTGATGTCTGTCTTTTGTACTTTTGATTGTGATGGGTTTGTTTGGTTTGGTAAAATTGAAAATTTG CTGGCTCTTGCAGCCGTCTCAAAAGGCCATCTTGTGGACAAGTTAGCATCACTTACTATGCTTTGCCCTGTTGCTTATATGCACCATATGTCCTCCCCCC TCATGAGAGGATCCATCAATCTCTTCTTCGCTGAGGGGAGGAGCACAAAGGTTTCTTCAGAAAGTGTGCAAGCTGCCATTAGTGGACTGCAGCAACTTGA TGACTGCACTTACTGGCAAGAATTGCTGTCTGAAACCTTCAGACTAGATTCGTTCCTAGTATATGAGCCTCAACCAACATCAACAAGGAACTTGATGCAT CTTTCTCAGATGGTGAGACAAGGTACGACATCAATGTACGACTATGACAACGAGGAGGAGAACATGAAACACTACGGGCAGCCTAGTCCTCCGGTTTACG ACATGGCGCAAATCCCAAGAGACTTGCCCATCTTCCTCACTTACGGAGGGACCAATGGTATAACTTCGGAGAAAGATGTTCAGATATTGCTGGGGACGAT GACCAATCACGACGGAGACAAGATCGTGACTCAGTTTGTAGATAACTATGCTCATGCAGACTATGTCATGGCTTACGGATGCTAA
AA sequence Show only first row Show all	>Lus10015063 pacid=23171511 polypeptide=Lus10015063 locus=Lus10015063.g ID=Lus10015063.BGIv1.0 annot-version=v1.0 MGAARKLKDHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR KGHAVGDIPGVRFKVVKCTENRLQFTTQPKYKMANANLQSVASFILVCGMLALAAAAAVNCVCRSVVEPLGYGCVEHNIQIKCDNKRRIHSLQRIASKSG GDSRTGKPVLLQHRLFMDGVTWFLLSPGQNLAFLMADNGYNVWVVSGRGTQISAAMFRTTYWDWTWDELAEFDLHATIVMSVFCTFDCDGFVWFGKIENL LALAAVSKGHLVDKLASLTMLCPVAYMHHMSSPLMRGSINLFFAEGRSTKVSSESVQAAISGLQQLDDCTYWQELLSETFRLDSFLVYEPQPTSTRNLMH LSQMVRQGTTSMYDYDNEEENMKHYGQPSPPVYDMAQIPRDLPIFLTYGGTNGITSEKDVQILLGTMTNHDGDKIVTQFVDNYAHADYVMAYGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015063 [exp]	0	1
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	1.4	0.9102
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10019910 [exp]	2.4	0.8759
AT3G45030			Ribosomal protein S10p/S20e fa...		Lus10031706 [exp]	4.2	0.8726
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10020398 [exp]	9.5	0.8384
AT5G28060			Ribosomal protein S24e family ...		Lus10004123 [exp]	9.8	0.8470
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10023825 [exp]	12.6	0.8176
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	14.5	0.8351
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	17.3	0.8309
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016431 [exp]	17.6	0.8138
AT1G60080			3'-5'-exoribonuclease family p...		Lus10021789 [exp]	19.8	0.7855

Compare expression of checked genes

Lus10015063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.