Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37080 154 / 1e-41 RIP3 ROP interactive partner 3 (.1) AT3G53350 149 / 5e-41 RIP4 ROP interactive partner 4 (.1.2.3) AT5G60210 83 / 6e-17 RIP5 ROP interactive partner 5 (.1.2) AT1G17140 49 / 3e-06 RIP1, ICR1 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023173 [exp] 306 / 2e-100 AT2G37080 315 / 2e-101 ROP interactive partner 3 (.1) Lus10026482 [exp] 200 / 1e-58 AT2G37080 435 / 7e-147 ROP interactive partner 3 (.1) Lus10019912 [exp] 82 / 7e-17 AT2G37080 264 / 7e-83 ROP interactive partner 3 (.1) Lus10011643 [exp] 77 / 1e-15 AT5G60210 152 / 6e-43 ROP interactive partner 5 (.1.2) Lus10013708 [exp] 43 / 0.0003 AT1G17140 229 / 8e-73 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085900 [exp] 177 / 1e-49 AT2G37080 474 / 2e-161 ROP interactive partner 3 (.1) Potri.006G131400 [exp] 171 / 8e-48 AT2G37080 473 / 1e-160 ROP interactive partner 3 (.1) Potri.019G047600 [exp] 63 / 2e-10 AT5G16730 608 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.013G079000 [exp] 55 / 8e-08 AT5G16730 619 / 0.0 Plant protein of unknown function (DUF827) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015064 pacid=23171528 polypeptide=Lus10015064 locus=Lus10015064.g ID=Lus10015064.BGIv1.0 annot-version=v1.0 ATGAATTCTTCTGCCAACTTTGTCATCAGAGCTGCCTCCTTGGAAACACCTCAGCGAAAATCTCCGGCTGCTACTCCACGAATAGCTCGTCAACTCCAGC TCCCGGTAGCTGATTCTAATCGAAACTCGTCCCTGATTCCCACAAGCAAGTCTCGAAGCCCTAAGGTTCCTGAACGCAAGTCACCAAGAAGTCTTGTGTC TGAGAAGAAGCAACCTAGTAGAGTTGCCGATCTTGAAACAAAGCTAGCTCAGCTGCAGGAGGATTATAAAAAGACTAAAGATCAATTAAATGTGTCAGAG TCATGTAAGAGGCAGGCTCAAAAGGAAGCTCAAGACACAAAGAAGCAGCTCGCTGAGCTGACTGATTGTGACGATACCAGGATCGAAGAGCTGCGTAAGA TCTCCCACGACCGAGATAGAGTTTGGCAATCTGAACTTGAATCCATCCAGAAGCAGCATGCGATTGATTCAGCTGCCTTGTCAACTGCCATGAATGAAAT ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGAAGAAAGTGAGGGGAGGAGGAAGAAAATAAAGAAAGGAGAAGAGGCTGTGAATGCAGAGATGGAGAGT GAATTGAGGAGGGTGAAGGTGCAGGCTGATCAATGGAGGAAAGCTGCTGAGGCAGCTGCATCCATGCTAGATAATCATAATCATAATAATAATAATAATA ATAATAATGTGAGGTATACCACCATGGCTGGGAGTTTGGATTCTCCTTTTTCGGAAGACATGGACGATTACGACGAGGATGATGAAGATGAGTCTACAAA AAAGAAGAATGGGAATATGCTGAAAAAGATAGGTGTTGTGCTGTGGAAGAAGGGTCATAAGTAA
AA sequence Show only first row Show all	>Lus10015064 pacid=23171528 polypeptide=Lus10015064 locus=Lus10015064.g ID=Lus10015064.BGIv1.0 annot-version=v1.0 MNSSANFVIRAASLETPQRKSPAATPRIARQLQLPVADSNRNSSLIPTSKSRSPKVPERKSPRSLVSEKKQPSRVADLETKLAQLQEDYKKTKDQLNVSE SCKRQAQKEAQDTKKQLAELTDCDDTRIEELRKISHDRDRVWQSELESIQKQHAIDSAALSTAMNEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEESEGRRKKIKKGEEAVNAEMES ELRRVKVQADQWRKAAEAAASMLDNHNHNNNNNNNNVRYTTMAGSLDSPFSEDMDDYDEDDEDESTKKKNGNMLKKIGVVLWKKGHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10015064 [exp]	0	1
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	3.5	0.8279
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	4.6	0.8333
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	4.7	0.8738
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10039644 [exp]	17.7	0.8466
AT5G50350			unknown protein		Lus10033401 [exp]	24.6	0.8153
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	33.0	0.8117
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	37.9	0.7640
AT4G29850			Eukaryotic protein of unknown ...		Lus10039596 [exp]	38.8	0.7823
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Lus10037634 [exp]	39.5	0.7420
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	40.8	0.7670

Compare expression of checked genes

Lus10015064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.