Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25270 169 / 6e-50 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 167 / 3e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G68170 167 / 5e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 164 / 1e-47 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G30340 155 / 2e-44 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 152 / 3e-43 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 147 / 3e-41 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 144 / 3e-40 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G01440 139 / 2e-38 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 139 / 3e-38 WAT1 Walls Are Thin 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020987 [exp] 383 / 1e-132 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020819 [exp] 195 / 2e-59 AT1G25270 262 / 6e-85 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10012691 [exp] 190 / 1e-57 AT1G25270 259 / 1e-83 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020817 [exp] 189 / 3e-57 AT1G25270 274 / 8e-90 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 160 / 4e-46 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10031437 [exp] 158 / 2e-45 AT1G09380 438 / 8e-154 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 157 / 3e-45 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 155 / 2e-44 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 155 / 6e-44 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108600 [exp] 241 / 1e-77 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307900 [exp] 193 / 1e-59 AT1G25270 254 / 2e-82 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 165 / 2e-48 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G182700 [exp] 161 / 5e-47 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.014G108500 [exp] 155 / 1e-44 AT3G30340 361 / 8e-124 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 152 / 3e-43 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 151 / 6e-43 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 149 / 2e-42 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 149 / 5e-42 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.010G209200 [exp] 149 / 6e-42 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10015066 pacid=23171539 polypeptide=Lus10015066 locus=Lus10015066.g ID=Lus10015066.BGIv1.0 annot-version=v1.0 ATGCAGCCCACATTTTCCTGGAAAATTTTGGTGCATTCACTCCTTAGTGGCCTATCTGGGGGATCCCTGGCTCAAAATCTCTACTTGGAAAGCTTAGCTT ACATGTCAGCAACATTTGCTTCCGCCATGGCAAACCTCGCCCCTGCCATCACCTTCCTATTGGCAGTCTCGTTCAGTGGGAAGGCGAAATTGATAGGGAC AATAACAGGGGTGGGTGGTGCAATGCTGCTAACGTTTTACAAAGGAGCAATTGTGGAGATATGGTCAACCCATGTTAATCTGCTAAATAAGACACCGCAT CCAGCACTTAACGGCGCTGTCCACCGCCAGAATCGTGGCATAGGTGCCCTCTTTGCAATTTCCAGTTGCTTCTCCTTCGCCCTCTGGCTTATTGTTCAGG CGAAAATGCGGGAGATATACCCGTGTCCATACTCGGCAACGGCATTAATGTGCATAATGGGATCTATTCAAGCTGTTTTATATGCTGTGTGTTCTGAAAA GGATTGGTACAATGGAAATTCGGGTATAGTGACGTCAGGACTGATGGTGACACTAATTACTTGGTGCGTGAAGAAAAGAGGACCCTTGTTTGCGTCTGCA TTCAACCCTCTCATGCTTGTCTGCGTCGCCATTGCTTCTTCTTTACTCCTCGATGAAAAGCTCTACCTTGGAAGCCTACTTGGAGCAACATTGATAATAT GTGGCTTATACGGTATGATATGGGGAAAAGGCAAGGAGGTCAAGCAGATGGAAGAGGAACAACAACAGCAACTTACATCTATGGTTATGATGGCCGCTGG TGCTCATCTATCAAACCTTTTACCTACGGAGAATGATCAACCTCCAGATAGCACGGTCATATTTGTGTCCGATGGCACGACAGACAACAAAGAAGATGAA ATACAACTAGCTAATTAA
AA sequence Show only first row Show all	>Lus10015066 pacid=23171539 polypeptide=Lus10015066 locus=Lus10015066.g ID=Lus10015066.BGIv1.0 annot-version=v1.0 MQPTFSWKILVHSLLSGLSGGSLAQNLYLESLAYMSATFASAMANLAPAITFLLAVSFSGKAKLIGTITGVGGAMLLTFYKGAIVEIWSTHVNLLNKTPH PALNGAVHRQNRGIGALFAISSCFSFALWLIVQAKMREIYPCPYSATALMCIMGSIQAVLYAVCSEKDWYNGNSGIVTSGLMVTLITWCVKKRGPLFASA FNPLMLVCVAIASSLLLDEKLYLGSLLGATLIICGLYGMIWGKGKEVKQMEEEQQQQLTSMVMMAAGAHLSNLLPTENDQPPDSTVIFVSDGTTDNKEDE IQLAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	3.2	0.9975
AT1G04670			unknown protein		Lus10004041 [exp]	4.5	0.9975
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	4.7	0.9655
					Lus10006918 [exp]	5.5	0.9975
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006917 [exp]	5.7	0.9806
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	5.7	0.9291
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029316 [exp]	6.2	0.9736
					Lus10007508 [exp]	6.3	0.9975
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	6.5	0.9697
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	7.1	0.9975

Compare expression of checked genes

Lus10015066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.