Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03040 199 / 4e-61 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 157 / 7e-45 IQD1 IQ-domain 1 (.1.2) AT3G52290 156 / 1e-44 IQD3 IQ-domain 3 (.1) AT2G26410 98 / 6e-23 IQD4 IQ-domain 4 (.1) AT2G33990 81 / 8e-18 IQD9 IQ-domain 9 (.1) AT3G22190 79 / 2e-16 IQD5 IQ-domain 5 (.1.2) AT3G15050 74 / 2e-15 IQD10 IQ-domain 10 (.1) AT2G26180 61 / 3e-10 IQD6 IQ-domain 6 (.1) AT3G59690 56 / 1e-08 IQD13 IQ-domain 13 (.1) AT5G35670 55 / 1e-08 IQD33 IQ-domain 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026486 [exp] 340 / 4e-114 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 333 / 5e-113 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 219 / 6e-69 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 217 / 3e-67 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10004107 [exp] 82 / 1e-17 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10013362 [exp] 81 / 3e-17 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10013522 [exp] 71 / 9e-14 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10025425 [exp] 70 / 2e-13 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10015300 [exp] 68 / 8e-13 AT2G33990 242 / 3e-79 IQ-domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131100 [exp] 308 / 8e-103 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 298 / 3e-99 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 238 / 2e-75 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.001G215200 [exp] 82 / 2e-17 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 80 / 7e-17 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.011G096500 [exp] 72 / 1e-14 AT3G15050 262 / 2e-87 IQ-domain 10 (.1) Potri.001G375700 [exp] 72 / 2e-14 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.019G095700 [exp] 71 / 1e-13 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.011G063200 [exp] 66 / 3e-12 AT2G33990 238 / 9e-78 IQ-domain 9 (.1) Potri.004G053000 [exp] 65 / 5e-12 AT2G33990 236 / 5e-77 IQ-domain 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015067 pacid=23171501 polypeptide=Lus10015067 locus=Lus10015067.g ID=Lus10015067.BGIv1.0 annot-version=v1.0 ATGAAAGAGGAATGGGATGCTAGCTTGCAGTCCAAGGAACAGATTGAGAGCAACTTGCTAAGCAAGTACGAGGCAACCATGAGACGGGAAAGAGCACTGG CTTATTCATTCTCCCACCAGCAAAACGGCAAGAATACTACAAAAGCAGCTACAAGTATGTTCATGACTCCTGGAAATCCTTCTTGGGGATGGAGCTGGTT GGAAAGATGGATGTCAGCTCATCCATGGGAAGCAAGGAACACTACTGACAAAGAACTCGACAACAACCAAGCTTCCGTGAAGAGTGCAAACCGTAGCTTG GTTGGTGGAGAAATCAGCAGAGCTTATGCTCGTTATCAGCTCAACTCGGATAGACTCTCACCAGTAGATCATCAAACCAACAAGCCAACAGCGACAGCAA GTACTACTACACCCAAGCCACCTTCTTCGATTGGGAGAAAGATGAAGTCGGCAAGTCCCAGGAGCAGCATTGGTGGCCCAGACGACGACTCTAGAAGCAT GGCGAGTTTCCAGTCACGTAGAAGGCACAGCATTGCTGGATCATCTGTGCGCGACGATGAAAGCTGCTTCGGAAGCTCTCCATCACTGCCAAGCTACATG GTACCAACTCTATCAGCTAAAGCCAAGTCCAGGCTCCAGAGTCCGCTAGGATTAGGAGCAGAGAAGAATGGGGGGACTTATACTCCTCCAGAGCCCTTGG CATCTGCAAAGAAGAAGCTTTCTTATCCCACCTCGTCGCCAGCCAGGCTGAGGCGGCATTCAGGTCCTCCAAAGGTGGATACCAGCTTGATCAAGGCTGG GAAAATGGTGGCAATATAG
AA sequence Show only first row Show all	>Lus10015067 pacid=23171501 polypeptide=Lus10015067 locus=Lus10015067.g ID=Lus10015067.BGIv1.0 annot-version=v1.0 MKEEWDASLQSKEQIESNLLSKYEATMRRERALAYSFSHQQNGKNTTKAATSMFMTPGNPSWGWSWLERWMSAHPWEARNTTDKELDNNQASVKSANRSL VGGEISRAYARYQLNSDRLSPVDHQTNKPTATASTTTPKPPSSIGRKMKSASPRSSIGGPDDDSRSMASFQSRRRHSIAGSSVRDDESCFGSSPSLPSYM VPTLSAKAKSRLQSPLGLGAEKNGGTYTPPEPLASAKKKLSYPTSSPARLRRHSGPPKVDTSLIKAGKMVAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015067 [exp]	0	1
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	5.3	0.9063
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015068 [exp]	10.0	0.8655
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	10.5	0.8908
AT5G65820			Pentatricopeptide repeat (PPR)...		Lus10011566 [exp]	12.2	0.8623
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022505 [exp]	12.3	0.9006
AT5G06270			unknown protein		Lus10029413 [exp]	15.8	0.8770
					Lus10026122 [exp]	16.4	0.8682
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	16.9	0.8862
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10009075 [exp]	17.7	0.8869
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10008521 [exp]	19.2	0.8574

Compare expression of checked genes

Lus10015067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.