Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03040 148 / 4e-42 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 110 / 6e-28 IQD1 IQ-domain 1 (.1.2) AT3G52290 91 / 4e-21 IQD3 IQ-domain 3 (.1) AT2G26410 65 / 4e-12 IQD4 IQ-domain 4 (.1) AT3G59690 54 / 2e-08 IQD13 IQ-domain 13 (.1) AT2G43680 52 / 1e-07 IQD14 IQ-domain 14 (.1.2.3) AT4G00820 52 / 1e-07 IQD17 IQ-domain 17 (.1) AT1G01110 51 / 2e-07 IQD18 IQ-domain 18 (.1.2) AT2G26180 51 / 2e-07 IQD6 IQ-domain 6 (.1) AT3G16490 50 / 5e-07 IQD26 IQ-domain 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019916 [exp] 182 / 3e-55 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 174 / 4e-51 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 96 / 7e-23 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 94 / 6e-22 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10014870 [exp] 67 / 1e-12 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10010104 [exp] 56 / 4e-09 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10027059 [exp] 56 / 5e-09 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10025593 [exp] 56 / 5e-09 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10012608 [exp] 53 / 4e-08 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086300 [exp] 187 / 9e-57 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 177 / 3e-53 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 111 / 2e-28 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G226600 [exp] 66 / 1e-12 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.018G062001 [exp] 60 / 1e-10 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.002G178500 [exp] 57 / 2e-09 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.008G156700 [exp] 57 / 2e-09 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 56 / 6e-09 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.014G104600 [exp] 55 / 8e-09 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.003G042700 [exp] 55 / 9e-09 AT1G72670 223 / 3e-68 IQ-domain 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10015068 pacid=23171542 polypeptide=Lus10015068 locus=Lus10015068.g ID=Lus10015068.BGIv1.0 annot-version=v1.0 ATGGGGAGAAAAGGGAGTTGGTTCTCTAGTGTGAAGAAAGCTTTCAGCCCTGACTCCAAGGATAAGAAAAACCAGAAATCCAAGAAGAAATGGTTTGCCA AGCAGAACCCTGATGGCAATTCAGCTCCAGCAGAGAATGTGACATCATCATCATCACCAACCCCACTTCCTCCACAGCCAGAGGAGGTTAAAGTAGTGGA GACCATAAATGTAAAGAATGATAATCATCATGCCTATGCTTTGCCAATTGCTGCTGAGGTCCCTCAGCCGGATCTTGTTGTTCATCAACCCTCCATAGAA GTGATTCGAGTGGCGAAATCTGATAAATATGCTGGGAAATCCAAGGAAGAAGCAGCAGCAATCAGGATTCAAACTATATTTCGAGGGTATCTGGCTACGA GGGCATTGAGGGCTTTAAGAGGATTAGTTAGGCTGAAACTTCTGATGGAAGGTCCTACTGTGAAGAGACAAGCCGTGAATACACTCCGATGCATGCAAAC TCTAGCTCGGGTACAAACTCAAATCCATACGAGGAGGGTGAGGATGTCTGAAGAAAACCAGGCTCTCCACAGACAACTCTTGCAGAAACATGTCAGAGAG CTTGAGAGCTTGCGGGTTCGTCTTCTCTCTCTCTCTCTCTCTCTCTCGTTTTGA
AA sequence Show only first row Show all	>Lus10015068 pacid=23171542 polypeptide=Lus10015068 locus=Lus10015068.g ID=Lus10015068.BGIv1.0 annot-version=v1.0 MGRKGSWFSSVKKAFSPDSKDKKNQKSKKKWFAKQNPDGNSAPAENVTSSSSPTPLPPQPEEVKVVETINVKNDNHHAYALPIAAEVPQPDLVVHQPSIE VIRVAKSDKYAGKSKEEAAAIRIQTIFRGYLATRALRALRGLVRLKLLMEGPTVKRQAVNTLRCMQTLARVQTQIHTRRVRMSEENQALHRQLLQKHVRE LESLRVRLLSLSLSLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015068 [exp]	0	1
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10008521 [exp]	1.0	0.8884
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	3.5	0.8781
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015067 [exp]	10.0	0.8655
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	10.1	0.8326
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	12.1	0.8551
AT2G03810			18S pre-ribosomal assembly pro...		Lus10004632 [exp]	13.2	0.8092
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003522 [exp]	15.0	0.8228
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	15.2	0.8720
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	16.2	0.8283
AT2G32580			Protein of unknown function (D...		Lus10035349 [exp]	17.3	0.8279

Compare expression of checked genes

Lus10015068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.