Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37090 226 / 8e-72 IRX9 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G27600 136 / 6e-37 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT5G67230 56 / 2e-08 IRX14-L, I14H IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G36890 51 / 5e-07 IRX14 irregular xylem 14, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019917 [exp] 244 / 9e-79 AT2G37090 417 / 3e-146 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10026487 [exp] 234 / 1e-74 AT2G37090 409 / 8e-143 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10007692 [exp] 129 / 3e-34 AT1G27600 498 / 2e-176 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10032817 [exp] 128 / 7e-34 AT1G27600 484 / 3e-171 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10041601 [exp] 52 / 2e-07 AT5G67230 632 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10010268 [exp] 52 / 3e-07 AT5G67230 634 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086400 [exp] 241 / 8e-78 AT2G37090 473 / 4e-168 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.006G131000 [exp] 237 / 4e-76 AT2G37090 439 / 7e-155 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.006G240200 [exp] 158 / 6e-45 AT1G27600 374 / 2e-127 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.002G107300 [exp] 132 / 1e-35 AT1G27600 477 / 1e-168 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.007G047500 [exp] 50 / 7e-07 AT5G67230 543 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G141500 [exp] 49 / 4e-06 AT5G67230 563 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.018G039901 [exp] 39 / 0.0008 AT2G37090 41 / 3e-05 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03360 [flax] [poplar] Glyco_transf_43 Glycosyltransferase family 43
Representative CDS sequence Show only first row Show all	>Lus10015069 pacid=23171522 polypeptide=Lus10015069 locus=Lus10015069.g ID=Lus10015069.BGIv1.0 annot-version=v1.0 ATGGGTTCTCTACAAAGATCTAAGAAGGTTGATGAGGTATGGAAGAAAGCAGTAGCCCATTTCGTCCTCTGCTTCGTTATGGGTTTCTTCACCGGATTTA CTCCAACCGACAGAAGTTCAATCCCCGTCACTACTACTACCACAACACGACCAACACCAACAACAGCTCGTTCAGACATTTCGTCGAACAGCTTGTCGAC GTCTTTGCACTTCTCTCCAAACAAGATCGCCTCTCTCAATTCAGCTGCCACCAAGCCTAACACAACCAGGAAATTAGCCTCCAAAGCCGATCCAGTGTCA AATTCAACCGCCGCCGGTGAACCCAAACCAGAGGATTCAGCGGGGCCGAAAGAGAGGCTAATTATCATAATCACTCCGGCGAACGGGAGGGATTGGTACC AAATGGTGTATCTCCGGCGGCTGGCCCACACGCTAAGACTGGTTCCACCGCCTCTGATGTGGGTGGTGGTGGAGAAGGCGCGGCCGACGAAGTCTGAGAT GAAGGAGTTGCCGGAGATGCTGAGGATGACCAAGGTTATGTACCGGCACATACTGTATTGGGATCATTTCACAGACGAAGAGGCGGAATTGGAGCACCAG AGGAATCTGGGGTTGAAGCTCCTCGAGTATCATCGCCTGAACGGGATTGTGCATTTTGCCGGGATTCATGATATCTATGACCTTCACTTCTTTAAGGAGC TCAGGCAAATTCACAAGTTGGGGAGATGGCCAGCGGCATTGGTGAGAGGAGGTGACGAGGTAGTAATACAACAAGGACCAAACTGCGATTCCTCAAAACT AACTCGTTGGCATCTCAACCATACAAAAACACTTGTTCATTTCAACTTGGCATTCAACACCTCTATCCTTTGGGCCCATCCTTCTTCTTCTTCTTCTTCT CAACACACTTCTCAGGTTATTGATTATTTCTAA
AA sequence Show only first row Show all	>Lus10015069 pacid=23171522 polypeptide=Lus10015069 locus=Lus10015069.g ID=Lus10015069.BGIv1.0 annot-version=v1.0 MGSLQRSKKVDEVWKKAVAHFVLCFVMGFFTGFTPTDRSSIPVTTTTTTRPTPTTARSDISSNSLSTSLHFSPNKIASLNSAATKPNTTRKLASKADPVS NSTAAGEPKPEDSAGPKERLIIIITPANGRDWYQMVYLRRLAHTLRLVPPPLMWVVVEKARPTKSEMKELPEMLRMTKVMYRHILYWDHFTDEEAELEHQ RNLGLKLLEYHRLNGIVHFAGIHDIYDLHFFKELRQIHKLGRWPAALVRGGDEVVIQQGPNCDSSKLTRWHLNHTKTLVHFNLAFNTSILWAHPSSSSSS QHTSQVIDYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10015069 [exp]	0	1
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	11.2	0.9046
AT1G17270			O-fucosyltransferase family pr...		Lus10003929 [exp]	11.2	0.9115
AT4G02900			ERD (early-responsive to dehyd...		Lus10028000 [exp]	15.2	0.9098
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	16.8	0.9087
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	19.0	0.9041
AT3G51990			Protein kinase superfamily pro...		Lus10019753 [exp]	20.3	0.8777
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	26.9	0.9057
AT3G13130			unknown protein		Lus10004415 [exp]	28.0	0.8994
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	28.0	0.9038
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10023399 [exp]	30.0	0.8884

Compare expression of checked genes

Lus10015069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.