Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60390 667 / 0 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 667 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 667 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 667 / 0 GTP binding Elongation factor Tu family protein (.1) AT1G18070 202 / 2e-60 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT1G35550 176 / 2e-55 elongation factor Tu C-terminal domain-containing protein (.1) AT5G10630 183 / 3e-52 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT4G02930 107 / 1e-25 GTP binding Elongation factor Tu family protein (.1) AT4G20360 101 / 1e-23 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023174 [exp] 692 / 0 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10019918 [exp] 692 / 0 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10026488 [exp] 690 / 0 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 674 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 674 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10041996 [exp] 199 / 3e-59 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10020153 [exp] 202 / 5e-59 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10018000 [exp] 199 / 1e-58 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10026952 [exp] 202 / 1e-57 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130900 [exp] 675 / 0 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 672 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 672 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 672 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 667 / 0 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 666 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 666 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 666 / 0 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.016G086500 [exp] 488 / 8e-176 AT5G60390 479 / 5e-171 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.016G086450 [exp] 202 / 1e-65 AT1G07930 198 / 6e-64 GTP binding Elongation factor Tu family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015070 pacid=23171538 polypeptide=Lus10015070 locus=Lus10015070.g ID=Lus10015070.BGIv1.0 annot-version=v1.0 ATGATTACTGGTACCTCACAGGCTGACTGTGCCATCCTTATTATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGACAGACACGTG AGCATGCTCTTCTGGCTTTCACCCTTGGTGTGAAGCAGATGATCTGTTGCTGTAACAAGATGGATGCCACCACTCCCAAGTACTCCAAGTCCAGGTTCGA TGAAATCGTGAAGGAAGTTTCATCCTACTTGAAGAAGGTTGGATACAACCCCGACAAAATCCCATTCGTTCCGATCTCTGGTTTCGAGGGTGACAACATG ATTGAGAGGTCAACCAACCTTGACTGGTACAAGGGCCCAACCCTTCTTGAGGCTCTGGACCAGATCAACGAGCCCAAGAGACCCTCAGACAAGCCCCTCC GTCTGCCACTTCAGGATGTGTACAAGATCGGTGGTATTGGAACTGTGCCAGTGGGACGTGTTGAGACTGGTGTCCTGAAGCCTGGTATGGTTGTTACCTT CGGCCCAACAGGTCTGACCACTGAAGTCAAGTCCGTGGAGATGCACCATGAAGCTCTCCAGGAGGCTCTTCCAGGTGACAACGTTGGTTTCAACGTTAAG AATGTTGCTGTTAAGGATATCAAGCGTGGGTATGTTGCATCCAACTCCAAGGATGACCCAGCCAGGGAAGCTGCCAATTTCACTTCCCAGGTTATCATCA TGAACCACCCTGGTCAGATTGGTAACGGATATGCTCCGGTGCTGGATTGCCACACCTCCCACATTGCCGTCAAGTTCTCTGAGATCCTGACCAAGATTGA CAGGCGGTCTGGTAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAACGGTGATGCTGGTATGGTGAAGATGATTCCCACCAAGCCCATGGTTGTGGAG ACTTTCTCCCAGTACCCACCTTTGGGTCGTTTTGCAGTGAGGGACATGCGTCAGACTGTTGCTGTCGGTGTCATCAAGAGTGTGGAGAAGAAGGACCCAT CCGGTGCCAAGGTCACCAAGTCTGCTGCCAAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10015070 pacid=23171538 polypeptide=Lus10015070 locus=Lus10015070.g ID=Lus10015070.BGIv1.0 annot-version=v1.0 MITGTSQADCAILIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNM IERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVK NVAVKDIKRGYVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVE TFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07930			GTP binding Elongation factor ...		Lus10015070 [exp]	0	1
AT5G60670			Ribosomal protein L11 family p...		Lus10019935 [exp]	2.2	0.9378
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10026698 [exp]	2.4	0.9242
AT5G60670			Ribosomal protein L11 family p...		Lus10026506 [exp]	3.2	0.9155
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10036855 [exp]	4.0	0.9173
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	4.9	0.8835
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10011005 [exp]	5.5	0.8961
AT3G11250			Ribosomal protein L10 family p...		Lus10009887 [exp]	5.5	0.9238
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	7.9	0.8828
AT1G07940			GTP binding Elongation factor ...		Lus10023174 [exp]	14.7	0.8843
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10012112 [exp]	15.2	0.8656

Compare expression of checked genes

Lus10015070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.