Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09730 130 / 2e-34 unknown protein AT4G31805 45 / 4e-05 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023175 [exp] 166 / 5e-51 AT3G09730 74 / 1e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130600 [exp] 214 / 3e-66 AT3G09730 212 / 8e-65 unknown protein Potri.006G263800 [exp] 55 / 3e-08 AT4G31805 93 / 2e-21 WRKY family transcription factor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015071 pacid=23171524 polypeptide=Lus10015071 locus=Lus10015071.g ID=Lus10015071.BGIv1.0 annot-version=v1.0 ATGTGGCACCTTCTCTTCGGCGCCGCCGTAGCTGCTGTCGTAGGATCCACCGGCCTTGCTGCTAAACGCCTCCTCCTCAAACACAATGCAGACGCCGTCG CAACTCCAGGCTGTCAAGAGAAGGCTCAAACCGCTATATCGGACGAGACTGGAGGAGGGAGTAATTGGAAGCGCCAAGAGATGTTTAGGTTTTCGAGTTC GGGTAATTCGAGCGGCAAAAAAATCAGGAGGTTGAGGAAGAAATTAGGGCTGTCTGGCCGTCGATTGAAGTACGGTGAATCTGATGGTGAATGCGACGTT CAGACAGAGTCGGTGGAGTCGGAGGTCAGTCGGCGGAGGAGAGCTGGCGTTTGCTTGAAGAAGAGGAGGACTACTAAGACTGTTTCATACAAGTCCGATT CTTCCAGGAAAGATAGTTCTTTGTTTGGCTGGGGCCTTGGTGTAGGAATGATGTGCATGATGTCAGCTGAACAAGTTGAGATCAATAAGCTGAGTGCTGC AATGGAAGAGACTTCAAAAGTGGTAAATGAATTGAAAAGTGAGCTTGATAAGAAGAAGTTCAGTCAAGTTGCTGCCTGCAGGCAACTCGTTGCTGAACCA GTGGATAATGGCACAAGTAATGGTATTAGTGGTACCAGCAACACCAAAAGTTCCAGACTTAGTATGGTGGAAGATGTTGAATGTCCAAGTAGCATTCTTA CCGAAGAGCCTGACATGGGTGTGCTAGAAATAGATCAACTGGAAGCAGAATTGGAGTCTGAACTCCAAAAGCTTCCACTGACAGCCAATGTCAATACGAA TTTTTCCAAGGCAAAGATTTCATCATCATCAGGAATAAGATATGAGCCAAAGGAGCATATTGATACCTATTCGCAACCACAGGGAGTAGTACCATCTGAA CTGGACAAGAAACTGTGTCATGTGCTGATTCAGCAGCAGGGAAGTCAAATTGTTGAGCTGGAATCAGAACTATACTTTGCACAAGAGAAGCTCCAGGAGA AGGAAGCTGAGCTTCGAGCTCTGAAGGAGTGCGTGAAGCGTCTCACTGAGTTCTCTCTGTCAAATGTTTCAGGCACGTTCTCTTAA
AA sequence Show only first row Show all	>Lus10015071 pacid=23171524 polypeptide=Lus10015071 locus=Lus10015071.g ID=Lus10015071.BGIv1.0 annot-version=v1.0 MWHLLFGAAVAAVVGSTGLAAKRLLLKHNADAVATPGCQEKAQTAISDETGGGSNWKRQEMFRFSSSGNSSGKKIRRLRKKLGLSGRRLKYGESDGECDV QTESVESEVSRRRRAGVCLKKRRTTKTVSYKSDSSRKDSSLFGWGLGVGMMCMMSAEQVEINKLSAAMEETSKVVNELKSELDKKKFSQVAACRQLVAEP VDNGTSNGISGTSNTKSSRLSMVEDVECPSSILTEEPDMGVLEIDQLEAELESELQKLPLTANVNTNFSKAKISSSSGIRYEPKEHIDTYSQPQGVVPSE LDKKLCHVLIQQQGSQIVELESELYFAQEKLQEKEAELRALKECVKRLTEFSLSNVSGTFS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09730			unknown protein		Lus10015071 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10035970 [exp]	26.7	0.7953
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10038467 [exp]	31.0	0.8548
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	32.4	0.8582
AT5G02610			Ribosomal L29 family protein ...		Lus10019179 [exp]	35.3	0.8573
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10027922 [exp]	42.6	0.8542
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	44.6	0.8434
AT2G15000			unknown protein		Lus10013885 [exp]	48.8	0.8439
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10027654 [exp]	70.9	0.8315
AT2G40316			unknown protein		Lus10007527 [exp]	81.2	0.8316
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Lus10025652 [exp]	93.8	0.8343

Compare expression of checked genes

Lus10015071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.